BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0196900 Os07g0196900|AK069093
(152 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0196900 Conserved hypothetical protein 288 1e-78
Os07g0242400 Cyclin-like F-box domain containing protein 187 3e-48
Os07g0183700 177 3e-45
Os07g0195700 74 3e-14
Os07g0242600 Cyclin-like F-box domain containing protein 74 4e-14
Os07g0198000 69 2e-12
>Os07g0196900 Conserved hypothetical protein
Length = 152
Score = 288 bits (737), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/152 (92%), Positives = 140/152 (92%)
Query: 1 MPSFDFATEKWSVALQGPLNRILEESNGTLSYHDLANQLMLSGLKGTLCTSHWNDQFYTV 60
MPSFDFATEKWSVALQGPLNRILEESNGTLSYHDLANQLMLSGLKGTLCTSHWNDQFYTV
Sbjct: 1 MPSFDFATEKWSVALQGPLNRILEESNGTLSYHDLANQLMLSGLKGTLCTSHWNDQFYTV 60
Query: 61 DLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQIY 120
DLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQIY
Sbjct: 61 DLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQIY 120
Query: 121 DPVXXXXXXXXXXXXYTGASVFTGSLLCPQSV 152
DPV YTGASVFTGSLLCPQSV
Sbjct: 121 DPVTDTSSDIIQISIYTGASVFTGSLLCPQSV 152
>Os07g0242400 Cyclin-like F-box domain containing protein
Length = 394
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/154 (59%), Positives = 115/154 (74%), Gaps = 4/154 (2%)
Query: 1 MPSFDFATEKWSVALQGPLNRILEESNGTLSYHDLANQLMLSGLKGTLCTSHWNDQFYTV 60
+PSFD ATE+WS ALQGP+NRILEE+NGTL+Y DL ++LML+ L+GTLCT+H+NDQ V
Sbjct: 243 IPSFDLATEQWSTALQGPVNRILEEANGTLNYADLTDRLMLAQLEGTLCTAHFNDQISAV 302
Query: 61 DLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQIY 120
DLWFL D E G WSK++RINV+ F G GD VQPLLVTDEG +VL +Q+GSKG+V IY
Sbjct: 303 DLWFLVDFENGMWSKEYRINVEFAFDGFGD--GVQPLLVTDEGNVVLWVQIGSKGMVWIY 360
Query: 121 DPVXXXXXX--XXXXXXYTGASVFTGSLLCPQSV 152
+PV +TG V+TG+ LCPQS+
Sbjct: 361 NPVTNTSSEIVQTKASIFTGVGVYTGNQLCPQSM 394
>Os07g0183700
Length = 361
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/152 (55%), Positives = 105/152 (69%)
Query: 1 MPSFDFATEKWSVALQGPLNRILEESNGTLSYHDLANQLMLSGLKGTLCTSHWNDQFYTV 60
MPSFD TE+WS+ LQGP IL ++NGT++Y LA LML+ LKGTL +HW D V
Sbjct: 210 MPSFDLETEQWSMTLQGPTKTILHDANGTVNYTGLAGHLMLAQLKGTLSAAHWKDHVSIV 269
Query: 61 DLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQIY 120
DLWFLTD +KGTWSK++RINVD VF G G Y+KV PL+VTDEG++V +Q G+K +VQIY
Sbjct: 270 DLWFLTDFDKGTWSKEYRINVDFVFFGTGVYVKVHPLVVTDEGEVVFWLQAGTKAIVQIY 329
Query: 121 DPVXXXXXXXXXXXXYTGASVFTGSLLCPQSV 152
+PV Y G V+TGS LC + V
Sbjct: 330 NPVTKISLDITETSIYAGVGVYTGSPLCLEGV 361
>Os07g0195700
Length = 294
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 3 SFDFATEKWSVALQGPLNR--ILEESNGTLSYHDLANQLMLSGLKGTLCTSHWNDQFYTV 60
SFD TE+W +QGP++ + + Y + +QL L+ LKG L H T+
Sbjct: 84 SFDLETEEWREDIQGPISSSFVFDGDFDPQEYFSIWHQLCLAELKGYLV--HHQRFCSTM 141
Query: 61 DLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQIY 120
DLWFLTD E W K++ I ++ F + +Y V+PLLV D+G+I++ +GS G++ IY
Sbjct: 142 DLWFLTDYETRAWVKEYSIQTES-FIPVLEY-DVKPLLVLDDGRILI--WLGSTGLLLIY 197
Query: 121 DPVXXXXXXXXXXXXYTGASVFTGSLLCPQSV 152
DP ++TGSLL Q+
Sbjct: 198 DP-RTSSFAEVKMRHLAEVGMYTGSLLSLQNA 228
>Os07g0242600 Cyclin-like F-box domain containing protein
Length = 397
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 3 SFDFATEKWSVALQGPLNR-ILEESNGTLSYHDLANQLMLSGLKGTLC-TSHWNDQFYTV 60
SFD E+W +QGP++R + + + Y + +QL L+ LKG L H + + T+
Sbjct: 254 SFDLEVEEWREDIQGPISRNFVYDMDFPDEYIAIWDQLSLAELKGYLVLVYHQSYRSSTI 313
Query: 61 DLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQIY 120
DLW+L D E TW K + I +++ F + + KV+PLLV D+G+IV+ +GS G++ IY
Sbjct: 314 DLWYLIDYETRTWIKQYSIQIES-FVPVRE-CKVKPLLVLDDGRIVV--WLGSTGLLLIY 369
Query: 121 DP 122
DP
Sbjct: 370 DP 371
>Os07g0198000
Length = 420
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 16/123 (13%)
Query: 3 SFDFATEKWSVALQGPLN-RILEESNGTLSYHDLANQLM-LSGLKGTLCTSHWND--QFY 58
FD TE+W L+GPLN +++ N DL+ L+ L+ LKG L T H + Q
Sbjct: 274 RFDLDTEQWRPLLRGPLNIHQIQQDN------DLSPPLLTLTELKGFLVTVHRDRSHQSS 327
Query: 59 TVDLWFLTDSEKGTWSKDHRINVDAVFHGIGDYLKVQPLLVTDEGKIVLSMQMGSKGVVQ 118
++DLWFL DSE+ TW K+++I + H PLLV DE IV ++ KG V
Sbjct: 328 SMDLWFLIDSEEETWVKEYKIQI----HLRPREFYAHPLLVLDERMIVFCVR--PKGRVM 381
Query: 119 IYD 121
+YD
Sbjct: 382 VYD 384
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,748,917
Number of extensions: 166760
Number of successful extensions: 281
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 6
Length of query: 152
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 60
Effective length of database: 12,232,113
Effective search space: 733926780
Effective search space used: 733926780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)