Os07g0196900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0196900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.91 | 0.225 | 12.2 | 0.511 | 0.412 | 0.411 | -0.0432 | -0.698 | 0.257 | 22.1 | 16.16 | 48 | -- | -- |
| 23.98 | 0.228 | 12.2 | 0.481 | 0.433 | 0.401 | -0.497 | -- | 0.263 | 22.3 | 14.6 | 63 | -- | -- |
| 22.91 | 0.223 | 12.2 | 0.513 | 0.41 | 0.411 | -- | -0.721 | 0.258 | 22.1 | 16.07 | 47 | -- | -- |
| 25.71 | 0.236 | 12.2 | 0.519 | 0.438 | 0.384 | -- | -- | 0.251 | 22 | 13.46 | 64 | -- | -- |
| 26.62 | 0.24 | 12.1 | 0.525 | -- | 0.66 | -- | -0.716 | 0.291 | -- | 12.68 | 43 | -- | -- |
| 25.99 | 0.239 | 12.2 | 0.486 | 0.809 | -- | -0.703 | -- | 0.222 | 23.2 | -- | -- | -- | -- |
| 28.1 | 0.248 | 12.2 | 0.515 | 0.813 | -- | -- | -- | 0.224 | 23.2 | -- | -- | -- | -- |
| 29.08 | 0.251 | 12.1 | 0.512 | -- | 0.652 | -- | -- | 0.248 | -- | 10.2 | 15 | -- | -- |
| 32.64 | 0.266 | 12.2 | -- | 0.399 | 0.414 | -- | -- | 0.197 | 21.8 | 10.01 | 66 | -- | -- |
| 69.34 | 0.389 | 12.1 | 0.535 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 35.09 | 0.277 | 12.2 | -- | 0.818 | -- | -- | -- | 0.167 | 23.2 | -- | -- | -- | -- |
| 35.72 | 0.278 | 12.2 | -- | -- | 0.652 | -- | -- | 0.206 | -- | 10 | 18 | -- | -- |
| 76.88 | 0.409 | 12.2 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.43 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 4 | 22.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 3 |
| 6 | 22.58 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 6 |
| 7 | 22.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 11 | 22.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 12 | 22.64 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 19 |
| 20 | 22.67 | radiation | 10 | 90 | < th | dose dependent | sin | 3 | NA |
| 26 | 22.69 | humidity | 50 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 27 | 22.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 30 | 22.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 48 | 22.75 | radiation | 20 | 30 | < th | dose dependent | rect. | 11 | 21 |
| 58 | 22.77 | humidity | 70 | 30 | > th | dose dependent | rect. | 24 | 16 |
| 70 | 22.79 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 73 | 22.80 | humidity | 80 | 10 | > th | dose independent | rect. | 2 | 16 |
| 80 | 22.81 | radiation | 20 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 107 | 22.86 | temperature | 25 | 720 | > th | dose independent | rect. | 23 | 10 |
| 117 | 22.87 | humidity | 50 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 171 | 22.95 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 15 |
| 179 | 22.96 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 10 |
| 236 | 23.03 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 8 |
| 240 | 23.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 296 | 23.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 16 |
| 298 | 23.10 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 317 | 23.12 | humidity | 50 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 324 | 23.13 | radiation | 1 | 30 | > th | dose dependent | sin | 7 | NA |
| 334 | 23.14 | radiation | 1 | 90 | > th | dose independent | sin | 3 | NA |
| 342 | 23.15 | radiation | 1 | 90 | < th | dose independent | sin | 2 | NA |
| 374 | 23.17 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 379 | 23.18 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 408 | 23.20 | humidity | 50 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 427 | 23.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 442 | 23.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 456 | 23.25 | temperature | 25 | 720 | > th | dose independent | sin | 8 | NA |
| 457 | 23.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 489 | 23.26 | radiation | 20 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 510 | 23.28 | temperature | 25 | 720 | < th | dose independent | sin | 8 | NA |
| 514 | 23.28 | humidity | 80 | 10 | > th | dose independent | rect. | 11 | 9 |
| 530 | 23.29 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 2 |
| 541 | 23.29 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 608 | 23.33 | temperature | 25 | 720 | > th | dose independent | rect. | 24 | 4 |
| 677 | 23.36 | radiation | 20 | 30 | < th | dose independent | rect. | 11 | 19 |
| 680 | 23.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 696 | 23.37 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 734 | 23.38 | radiation | 20 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 735 | 23.38 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 773 | 23.40 | humidity | 50 | 10 | > th | dose dependent | rect. | 2 | 12 |
| 805 | 23.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 6 |
| 821 | 23.42 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 885 | 23.44 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 923 | 23.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 4 |
| 957 | 23.46 | radiation | 1 | 270 | < th | dose independent | rect. | 22 | 20 |
| 958 | 23.46 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |