BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0190000 Os07g0190000|AK100909
         (713 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0190000  Similar to 1-deoxy-D-xylulose 5-phosphate synt...  1417   0.0  
Os05g0408900  Similar to 1-D-deoxyxylulose 5-phosphate synthase  1048   0.0  
Os06g0142900  Deoxyxylulose-5-phosphate synthase family protein   620   e-177

>Os07g0190000 Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor
          Length = 713

 Score = 1417 bits (3667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/713 (97%), Positives = 693/713 (97%)

Query: 1   MALQASSSPSMFRAIPTNTNASCRRKLQVRXXXXXXXXNGGGDGKVMMRKEAASGAWKID 60
           MALQASSSPSMFRAIPTNTNASCRRKLQVR        NGGGDGKVMMRKEAASGAWKID
Sbjct: 1   MALQASSSPSMFRAIPTNTNASCRRKLQVRASAAAAAANGGGDGKVMMRKEAASGAWKID 60

Query: 61  YSGEKPATPLLDTVNYPVHMKNLSTPXXXXXXXXXXXXIVHTVSKTGGHLSSSLGVVELA 120
           YSGEKPATPLLDTVNYPVHMKNLSTP            IVHTVSKTGGHLSSSLGVVELA
Sbjct: 61  YSGEKPATPLLDTVNYPVHMKNLSTPELEQLAAELRAEIVHTVSKTGGHLSSSLGVVELA 120

Query: 121 VALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFGA 180
           VALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFGA
Sbjct: 121 VALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFGA 180

Query: 181 GHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLND 240
           GHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLND
Sbjct: 181 GHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLND 240

Query: 241 NKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKVD 300
           NKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKVD
Sbjct: 241 NKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKVD 300

Query: 301 EYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGK 360
           EYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGK
Sbjct: 301 EYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKGK 360

Query: 361 GYPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAAM 420
           GYPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAAM
Sbjct: 361 GYPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAAM 420

Query: 421 GGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHD 480
           GGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHD
Sbjct: 421 GGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHD 480

Query: 481 VDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAAA 540
           VDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAAA
Sbjct: 481 VDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAAA 540

Query: 541 IDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAAE 600
           IDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAAE
Sbjct: 541 IDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAAE 600

Query: 601 ALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSLSGLL 660
           ALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSLSGLL
Sbjct: 601 ALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSLSGLL 660

Query: 661 DGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQLS 713
           DGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQLS
Sbjct: 661 DGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQLS 713



>Os05g0408900 Similar to 1-D-deoxyxylulose 5-phosphate synthase
          Length = 720

 Score = 1048 bits (2710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/653 (76%), Positives = 560/653 (85%)

Query: 60  DYSGEKPATPLLDTVNYPVHMKNLSTPXXXXXXXXXXXXIVHTVSKTGGHLSSSLGVVEL 119
           +Y  ++P TPLLDTVNYP+HMKNLS              ++  VSKTGGHL SSLGVVEL
Sbjct: 62  EYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVEL 121

Query: 120 AVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFG 179
            VALH+VF+TP+DKI+WDVGHQ+YPHKILTGRR +M T+RQT+GL+GF KR ES +D+FG
Sbjct: 122 TVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSFG 181

Query: 180 AGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLN 239
            GHSST+ISAALGMAV RDL G KN+V++VIGDGAMTAGQAYEAMNN+GYLDS+MIV+LN
Sbjct: 182 TGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILN 241

Query: 240 DNKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKV 299
           DNKQVSLPTATLDGPA PVGALS AL+KLQSS  LR LRE AK VTKQIGG  HE+AAKV
Sbjct: 242 DNKQVSLPTATLDGPAPPVGALSSALSKLQSSRPLRELREVAKGVTKQIGGSVHELAAKV 301

Query: 300 DEYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKG 359
           DEYARGM+S SGSTLFEELGLYYIGPVDGH++DDL+ I  +VKS    GPVL+H+VTEKG
Sbjct: 302 DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEKG 361

Query: 360 KGYPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAA 419
           +GYP AE AAD+ HGV KFDP TG+QFKS   TLSYT YFAEALI EAE D++VV IHAA
Sbjct: 362 RGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHAA 421

Query: 420 MGGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVH 479
           MGGGTGLNYF +RFP RCFDVGIAEQHAVTFAAGLA EGLKPFCAIYSSFLQRGYDQVVH
Sbjct: 422 MGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVH 481

Query: 480 DVDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAA 539
           DVDLQ+LPVRFAMDRAGLVGADGPTHCGAFDV YMACLPNMVVMAP+DEAEL HMVATAA
Sbjct: 482 DVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAA 541

Query: 540 AIDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAA 599
           AIDDRPSCFR+PRGNGIG  LPPN+KG PLEVGKGRVL+ G RVALLGYG+ VQ C+ AA
Sbjct: 542 AIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAA 601

Query: 600 EALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSLSGL 659
             ++ HG+ VTVADARFCKPLD  LIR LA+ HEVL+TVEEGSIGGFGSHVA +++L GL
Sbjct: 602 SLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGL 661

Query: 660 LDGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQL 712
           LDG LK R + LPDRYIDHG+P DQL EAGLTP HIAATV ++LG+  EAL +
Sbjct: 662 LDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714



>Os06g0142900 Deoxyxylulose-5-phosphate synthase family protein
          Length = 562

 Score =  620 bits (1598), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 298/559 (53%), Positives = 390/559 (69%), Gaps = 19/559 (3%)

Query: 116 VVELAVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAH 175
           VVELA+A+H+VF+ P DKI+WD G   Y HKILTGRRS  HTI+Q  GL+GF  R ES +
Sbjct: 14  VVELAIAIHYVFNAPMDKILWDAGQHTYAHKILTGRRSLFHTIKQRKGLSGFTSRFESEY 73

Query: 176 DAFGAGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMI 235
           D FGAGH   S+SA LGMAVARDL G+KN +++VI +    AGQ YEAM ++G+LDSNM+
Sbjct: 74  DPFGAGHGCNSLSAGLGMAVARDLGGRKNRIVTVISNWTTMAGQVYEAMGHAGFLDSNMV 133

Query: 236 VVLNDNKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEV 295
           V+LND++   LP A      + + ALS AL+K+QSS   R+ REAAK ++K  G   HE 
Sbjct: 134 VILNDSRHTLLPKADSQSKMS-INALSSALSKVQSSKGFRKFREAAKGLSKWFGKGMHEF 192

Query: 296 AAKVDEYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIV 355
           AAK+DEYARGM+   G+TLFEELGLYYIGP+DG+++DDL+ +  +V ++ + GPVLVH++
Sbjct: 193 AAKIDEYARGMIGPHGATLFEELGLYYIGPIDGNNIDDLICVLKEVSTLDSTGPVLVHVI 252

Query: 356 TEKGKG---------YPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIRE 406
           TE  K           P  E   D    ++KF             + +Y   F E+LI E
Sbjct: 253 TENEKDSGGEFNSEITPDEEGPPDSSQDILKF--------LENGLSRTYNDCFVESLIAE 304

Query: 407 AEADDKVVGIHAAMGGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIY 466
           AE D  +V +H  MG    +  F  RFP+R FD+GIAEQHAVTF+AGLA  GLKPFC I 
Sbjct: 305 AENDKHIVVVHGGMGIDRSIQLFQSRFPDRFFDLGIAEQHAVTFSAGLACGGLKPFCIIP 364

Query: 467 SSFLQRGYDQVVHDVDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPA 526
           S+FLQR YDQ+V DVD+Q++PVRFA+  AGLVG++GPT+ G FD+ +M+CLPNM+VM+P+
Sbjct: 365 STFLQRAYDQIVEDVDMQKIPVRFAITSAGLVGSEGPTNSGPFDITFMSCLPNMIVMSPS 424

Query: 527 DEAELMHMVATAAAIDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALL 586
           +E EL+ MVATAA ++DRP CFR+P+G  +G      + G PLE+GKG +L  G  +A L
Sbjct: 425 NEDELIDMVATAAMVEDRPICFRYPKGAIVGTSGTLAY-GNPLEIGKGEILAEGKEIAFL 483

Query: 587 GYGTMVQACMKAAEALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGF 646
           GYG +VQ C+ A   L   GI  TVA+ARFCKPLD  LIR L  +H+ L+TVEEG++GGF
Sbjct: 484 GYGDVVQRCLIARSLLFNFGIQATVANARFCKPLDIDLIRMLCQQHDFLITVEEGTVGGF 543

Query: 647 GSHVAHYLSLSGLLDGPLK 665
           GSHV+ ++SL GLLDG +K
Sbjct: 544 GSHVSQFISLDGLLDGKIK 562



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,339,183
Number of extensions: 1143774
Number of successful extensions: 2655
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2653
Number of HSP's successfully gapped: 3
Length of query: 713
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 605
Effective length of database: 11,396,689
Effective search space: 6894996845
Effective search space used: 6894996845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)