Os06g0142900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Deoxyxylulose-5-phosphate synthase family protein.
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Os06g0142900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Deoxyxylulose-5-phosphate synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.79 | 0.204 | 11.5 | 0.334 | 0.562 | -0.344 | 0.55 | -0.322 | 0.346 | 1.27 | 21.2 | 45 | -- | -- |
| 18.91 | 0.203 | 11.5 | 0.27 | 0.543 | -0.31 | 0.397 | -- | 0.313 | 1.31 | 22.1 | 193 | -- | -- |
| 19.34 | 0.205 | 11.5 | 0.242 | 0.525 | -0.32 | -- | 0.00945 | 0.302 | 1.32 | 22 | 193 | -- | -- |
| 19.32 | 0.205 | 11.5 | 0.225 | 0.528 | -0.318 | -- | -- | 0.305 | 1.35 | 22.02 | 193 | -- | -- |
| 27.81 | 0.246 | 11.5 | 0.092 | -- | -0.519 | -- | 0.387 | 0.19 | -- | 24.7 | 969 | -- | -- |
| 24.48 | 0.232 | 11.5 | 0.342 | 0.454 | -- | 0.295 | -- | 0.405 | 1.26 | -- | -- | -- | -- |
| 24.83 | 0.233 | 11.5 | 0.332 | 0.453 | -- | -- | -- | 0.404 | 1.21 | -- | -- | -- | -- |
| 28.22 | 0.247 | 11.5 | 0.189 | -- | -0.498 | -- | -- | 0.23 | -- | 24.9 | 976 | -- | -- |
| 20.55 | 0.211 | 11.5 | -- | 0.544 | -0.352 | -- | -- | 0.278 | 1.47 | 21.8 | 215 | -- | -- |
| 37.55 | 0.286 | 11.5 | 0.349 | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
| 27.74 | 0.246 | 11.5 | -- | 0.459 | -- | -- | -- | 0.367 | 1.24 | -- | -- | -- | -- |
| 29.07 | 0.251 | 11.5 | -- | -- | -0.528 | -- | -- | 0.197 | -- | 24.72 | 971 | -- | -- |
| 40.77 | 0.298 | 11.5 | -- | -- | -- | -- | -- | 0.374 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 3 | 18.35 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 6 | 18.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 7 | 18.41 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 19 | 18.56 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 29 | 18.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 15 |
| 36 | 18.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 40 | 18.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 48 | 18.70 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 55 | 18.72 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 20 |
| 66 | 18.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 96 | 18.79 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 98 | 18.80 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 146 | 18.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 12 |
| 205 | 18.94 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 207 | 18.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 240 | 19.00 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 12 |
| 265 | 19.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 361 | 19.10 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 368 | 19.10 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 388 | 19.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 396 | 19.13 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 405 | 19.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 407 | 19.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 418 | 19.15 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 10 |
| 422 | 19.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 11 |
| 474 | 19.19 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 519 | 19.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 586 | 19.27 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 775 | 19.41 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 813 | 19.43 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 854 | 19.45 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 895 | 19.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 14 |