Os07g0190000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor.
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Os07g0190000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.04 | 0.602 | 11.9 | 0.799 | 1.7 | -3.66 | 1.66 | -4.97 | 0.676 | 3.75 | 0.1692 | 1275 | 15.2 | -- |
| 169.14 | 0.606 | 12 | 0.563 | 1.84 | -2.69 | 1.01 | -- | 0.667 | 3.68 | 0.1679 | 1180 | 14.2 | -- |
| 169.8 | 0.607 | 11.9 | 0.706 | 1.58 | -3.91 | -- | -5.59 | 0.643 | 3.18 | 0.1426 | 1318 | 16.2 | -- |
| 172.48 | 0.612 | 12 | 0.575 | 1.92 | -2.89 | -- | -- | 0.676 | 3.89 | 0.1486 | 1180 | 13.8 | -- |
| 262.35 | 0.754 | 11.9 | 0.794 | -- | -5.32 | -- | -8.65 | 0.612 | -- | 6.491e-06 | 1318 | 20.2 | -- |
| 227.87 | 0.708 | 12 | 1.13 | 1.41 | -- | 1.2 | -- | 0.849 | 2.28 | -- | -- | -- | -- |
| 233.18 | 0.715 | 12 | 1.09 | 1.41 | -- | -- | -- | 0.842 | 2.21 | -- | -- | -- | -- |
| 274.27 | 0.771 | 12 | 0.4 | -- | -3.35 | -- | -- | 0.533 | -- | 1.485 | 1262 | 21.1 | -- |
| 178.55 | 0.622 | 12 | -- | 2 | -3.24 | -- | -- | 0.573 | 3.97 | 0.08 | 1176 | 14.1 | -- |
| 351.25 | 0.876 | 11.9 | 1.15 | -- | -- | -- | -- | 0.876 | -- | -- | -- | -- | -- |
| 264.59 | 0.761 | 12 | -- | 1.43 | -- | -- | -- | 0.721 | 2.23 | -- | -- | -- | -- |
| 279.56 | 0.779 | 12 | -- | -- | -3.22 | -- | -- | 0.538 | -- | 1.426 | 1304 | 21.8 | -- |
| 386.17 | 0.917 | 12 | -- | -- | -- | -- | -- | 0.749 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 156.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 156.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 170.73 | humidity | 60 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 4 | 173.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 11 | 174.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 19 | 175.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 20 | 175.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 24 | 176.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 26 | 176.13 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 32 | 176.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 39 | 176.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 59 | 177.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 71 | 177.84 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 81 | 178.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 95 | 179.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 101 | 179.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 110 | 180.17 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 115 | 180.44 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 136 | 181.15 | radiation | 1 | 1440 | > th | dose independent | sin | 23 | NA |
| 140 | 181.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 142 | 181.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 143 | 181.38 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 145 | 181.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 160 | 181.53 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 164 | 181.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 205 | 182.19 | radiation | 1 | 1440 | < th | dose independent | sin | 23 | NA |
| 246 | 182.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 249 | 182.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 251 | 182.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 257 | 182.68 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 281 | 183.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 300 | 183.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 309 | 183.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 346 | 183.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 12 |
| 348 | 183.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 12 |
| 356 | 183.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 18 |
| 366 | 183.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 381 | 183.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 394 | 183.82 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 395 | 183.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 410 | 183.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 456 | 184.09 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 459 | 184.12 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 553 | 184.62 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 586 | 184.75 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 591 | 184.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 611 | 184.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 619 | 184.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 638 | 184.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 639 | 184.98 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 645 | 185.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 696 | 185.53 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 698 | 185.53 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 700 | 185.53 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 751 | 185.53 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 753 | 185.53 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 755 | 185.53 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 843 | 185.78 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 862 | 185.93 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 877 | 186.01 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 946 | 186.58 | humidity | 90 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 973 | 186.84 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 976 | 186.88 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 983 | 187.05 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 12 |