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Os05g0408900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 1-D-deoxyxylulose 5-phosphate synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.76 (0.0402) R2 : 0.748
β1 : -2.68 (0.147) R2dD : 0.198 R2D : 0.104
β2 : 4.8 (0.177) R2dC : 1.4 R2C : -0.473
β3 : 3.56 (0.166) R2dE : 0.876 R2E : -1.03
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.53 (0.0857) R2dN8 : 0.233 R2N8 : 0.117
σ : 0.751
deviance : 259.69
__
_____
C
peak time of C : 12.7
E
wheather : radiation
threshold : 5.922e-05
memory length : 333
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 5.24
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
242.05 0.731 9.74 -2.62 4.89 3.54 -2.78 -0.795 -1.5 12.6 0.00958 297 5 --
242.7 0.726 9.74 -2.68 4.85 3.54 -2.11 -- -1.5 12.7 0.003606 300 4.91 --
249.09 0.735 9.75 -2.69 4.99 3.63 -- 1.75 -1.51 12.7 0.1723 300 5.1 --
259.69 0.751 9.76 -2.68 4.8 3.56 -- -- -1.53 12.7 5.922e-05 333 5.24 --
345.02 0.865 9.88 -2.81 -- 2.91 -- 0.839 -1.49 -- 20.09 1084 5.8 --
300.82 0.813 9.76 -2.74 2.53 -- -1.95 -- -1.59 9.31 -- -- -- --
314.31 0.83 9.76 -2.82 2.55 -- -- -- -1.59 9.22 -- -- -- --
314.44 0.826 9.83 -2.82 -- 2.56 -- -- -1.57 -- 62.82 1094 5.93 --
460.3 0.999 9.74 -- 4.84 3.43 -- -- -1.4 12.8 0.01597 332 5.34 --
691.35 1.23 9.83 -2.83 -- -- -- -- -1.58 -- -- -- -- --
523.61 1.07 9.69 -- 2.55 -- -- -- -1.28 9.3 -- -- -- --
523.38 1.07 9.73 -- -- 2.72 -- -- -1.21 -- 20 1078 5.41 --
902.24 1.4 9.76 -- -- -- -- -- -1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.85 temperature 10.0 270 > th dose dependent rect. 16 17
9 246.45 radiation 1.0 270 < th dose dependent sin 11 NA
11 247.55 radiation 1.0 270 < th dose dependent rect. 20 14
12 247.59 radiation 1.0 270 < th dose dependent rect. 20 16
17 247.98 temperature 15.0 10 > th dose dependent rect. 18 17
20 248.62 wind 7.0 270 < th dose independent rect. 20 9
27 248.88 atmosphere 1000.0 10 > th dose independent rect. 6 16
36 249.63 temperature 20.0 270 > th dose independent rect. 15 7
42 250.05 temperature 20.0 90 > th dose independent rect. 17 18
46 250.63 wind 1.0 43200 > th dose independent rect. 13 12
47 250.70 radiation 1.0 270 < th dose independent sin 11 NA
52 251.45 wind 1.0 43200 < th dose independent rect. 13 12
56 252.01 radiation 1.0 270 < th dose independent rect. 20 11
57 252.01 temperature 15.0 270 > th dose independent rect. 5 15
62 252.28 radiation 1.0 270 < th dose independent rect. 20 14
63 252.29 radiation 1.0 270 < th dose independent rect. 20 16
68 252.53 wind 1.0 14400 < th dose dependent rect. 23 1
70 252.66 wind 1.0 43200 > th dose independent rect. 10 1
78 252.87 precipitation 0.1 270 < th dose independent rect. 20 9
79 252.87 precipitation 0.1 270 < th dose dependent rect. 20 9
87 253.02 temperature 10.0 270 > th dose independent rect. 20 9
88 253.02 temperature 30.0 270 < th dose independent rect. 20 9
89 253.02 humidity 50.0 270 > th dose independent rect. 20 9
92 253.02 atmosphere 995.0 270 > th dose independent rect. 20 9
93 253.02 radiation 20.0 270 < th dose independent rect. 20 9
97 253.02 atmosphere 1015.0 270 < th dose independent rect. 5 15
98 253.03 radiation 40.0 270 < th dose dependent rect. 20 9
102 253.09 atmosphere 1000.0 90 > th dose independent rect. 17 18
116 253.54 wind 1.0 43200 < th dose dependent rect. 12 13
118 253.66 wind 1.0 43200 < th dose independent rect. 10 1
125 253.88 humidity 50.0 270 > th dose independent rect. 9 7
147 254.49 radiation 10.0 14400 < th dose independent rect. 13 1
156 255.07 wind 9.0 270 < th dose independent rect. 5 15
158 255.11 humidity 50.0 270 > th dose independent rect. 10 18
160 255.17 radiation 1.0 270 > th dose independent sin 11 NA
167 255.32 precipitation 0.1 270 < th dose independent rect. 5 15
168 255.32 precipitation 0.1 270 < th dose dependent rect. 5 15
177 255.54 humidity 50.0 90 > th dose independent rect. 11 6
183 255.72 temperature 20.0 43200 < th dose independent rect. 21 1
198 255.97 temperature 20.0 43200 > th dose independent rect. 20 2
205 256.09 wind 1.0 270 > th dose independent rect. 9 7
207 256.09 temperature 10.0 270 > th dose dependent rect. 15 8
210 256.13 humidity 50.0 270 > th dose independent rect. 22 17
213 256.19 wind 1.0 14400 < th dose dependent rect. 22 3
214 256.25 radiation 30.0 270 < th dose independent rect. 5 15
224 256.48 temperature 10.0 270 > th dose dependent rect. 3 7
227 256.59 wind 1.0 43200 < th dose dependent sin 18 NA
230 256.65 wind 1.0 43200 < th dose dependent rect. 10 1
238 256.73 precipitation 0.1 43200 > th dose independent rect. 18 2
244 256.83 temperature 10.0 270 > th dose independent rect. 9 7
245 256.83 atmosphere 1015.0 270 < th dose independent rect. 9 7
266 257.09 radiation 1.0 270 > th dose independent rect. 16 18
268 257.12 wind 1.0 43200 < th dose dependent rect. 2 6
269 257.14 wind 3.0 43200 < th dose dependent rect. 4 1
275 257.21 wind 1.0 43200 < th dose dependent rect. 13 10
276 257.24 wind 9.0 270 < th dose independent rect. 9 7
279 257.26 precipitation 0.1 270 < th dose independent rect. 9 7
281 257.26 precipitation 0.1 270 < th dose dependent rect. 9 7
283 257.30 precipitation 0.1 43200 < th dose independent rect. 18 2
285 257.30 precipitation 0.1 43200 < th dose dependent rect. 18 2
286 257.31 wind 1.0 43200 < th dose dependent rect. 7 18
318 257.49 wind 1.0 90 > th dose independent rect. 11 6
321 257.50 humidity 70.0 43200 > th dose dependent rect. 20 1
324 257.55 wind 1.0 270 > th dose independent rect. 21 7
330 257.60 humidity 80.0 43200 < th dose dependent rect. 7 1
332 257.68 wind 1.0 270 > th dose independent rect. 15 7
334 257.74 wind 1.0 43200 > th dose independent sin 17 NA
336 257.80 humidity 60.0 43200 > th dose dependent rect. 18 5
345 257.95 temperature 10.0 90 > th dose independent rect. 11 6
346 257.95 atmosphere 1015.0 90 < th dose independent rect. 11 6
350 257.96 wind 1.0 270 > th dose independent rect. 10 18
360 258.03 wind 9.0 90 < th dose independent rect. 17 18
367 258.10 precipitation 0.1 90 < th dose independent rect. 11 6
368 258.10 precipitation 0.1 90 < th dose dependent rect. 11 6
369 258.12 precipitation 0.1 43200 < th dose independent rect. 16 1
371 258.12 precipitation 0.1 43200 < th dose dependent rect. 16 1
374 258.16 radiation 1.0 270 > th dose independent rect. 17 16
380 258.22 radiation 40.0 270 < th dose independent rect. 15 7
382 258.24 precipitation 0.1 43200 > th dose dependent rect. 18 2
395 258.38 precipitation 0.1 43200 > th dose dependent rect. 16 1
398 258.39 wind 9.0 43200 > th dose dependent rect. 18 1
399 258.39 wind 1.0 43200 < th dose dependent rect. 4 3
408 258.45 temperature 10.0 270 > th dose independent rect. 22 17
410 258.46 wind 5.0 10 < th dose independent rect. 22 8
414 258.49 wind 9.0 10 < th dose dependent rect. 6 16
416 258.51 wind 1.0 43200 < th dose independent sin 17 NA
434 258.69 radiation 40.0 270 < th dose independent rect. 16 17
436 258.70 precipitation 0.1 270 < th dose independent rect. 16 17
438 258.70 precipitation 0.1 270 < th dose dependent rect. 16 17
441 258.73 wind 3.0 43200 > th dose dependent rect. 8 1
449 258.80 precipitation 0.1 270 < th dose independent rect. 22 17
450 258.80 precipitation 0.1 270 < th dose dependent rect. 22 17
454 258.86 wind 1.0 270 > th dose independent rect. 11 16
459 258.91 wind 5.0 43200 > th dose independent rect. 8 1
460 258.91 wind 9.0 270 < th dose independent rect. 22 17
461 258.91 temperature 10.0 10 > th dose dependent rect. 6 16
462 258.96 precipitation 0.1 43200 > th dose independent rect. 16 1
465 258.98 wind 9.0 90 < th dose independent rect. 11 6
472 259.04 humidity 80.0 43200 < th dose independent rect. 6 1
483 259.12 wind 5.0 14400 < th dose independent rect. 14 1
499 259.30 humidity 50.0 270 > th dose dependent rect. 20 9
500 259.31 atmosphere 1015.0 270 < th dose independent rect. 15 7
507 259.36 atmosphere 995.0 270 > th dose independent rect. 15 7
509 259.38 wind 7.0 270 < th dose independent rect. 3 8
511 259.41 radiation 40.0 43200 < th dose dependent rect. 23 6
512 259.42 wind 5.0 43200 < th dose independent rect. 8 1
517 259.45 atmosphere 995.0 270 > th dose independent rect. 9 7
518 259.45 wind 9.0 1440 < th dose independent rect. 23 8
523 259.47 temperature 10.0 10 > th dose dependent sin 8 NA
527 259.51 radiation 1.0 270 > th dose independent rect. 15 20
544 259.58 precipitation 0.1 43200 < th dose independent rect. 14 6
546 259.58 precipitation 0.1 43200 < th dose dependent rect. 14 6
558 259.67 radiation 20.0 14400 < th dose independent rect. 23 7
564 259.71 wind 3.0 14400 > th dose independent rect. 13 1
576 259.76 wind 7.0 14400 < th dose dependent rect. 14 1
619 259.85 atmosphere 995.0 270 > th dose independent rect. 22 17
625 259.87 wind 3.0 14400 > th dose independent rect. 12 3
628 259.87 precipitation 0.1 43200 > th dose independent rect. 14 6
642 259.93 temperature 15.0 270 > th dose independent rect. 3 8
644 259.94 wind 1.0 43200 < th dose independent rect. 2 6
656 260.00 wind 9.0 10 < th dose independent rect. 6 16
658 260.00 radiation 30.0 10 < th dose independent rect. 6 16
661 260.02 humidity 70.0 43200 < th dose independent rect. 17 13
662 260.03 wind 9.0 43200 < th dose dependent rect. 7 2
667 260.07 humidity 50.0 14400 > th dose independent rect. 18 5
689 260.10 wind 1.0 14400 > th dose dependent rect. 14 1
690 260.11 humidity 80.0 43200 > th dose independent rect. 6 1
713 260.24 atmosphere 1015.0 90 < th dose dependent rect. 11 6
718 260.27 precipitation 0.1 10 < th dose independent rect. 6 16
721 260.27 precipitation 0.1 10 < th dose dependent rect. 6 16
725 260.30 precipitation 0.1 43200 > th dose independent rect. 7 2
728 260.31 temperature 10.0 10 > th dose independent rect. 22 8
729 260.31 temperature 30.0 10 < th dose independent rect. 22 8
730 260.31 humidity 50.0 10 > th dose independent rect. 22 8
733 260.31 atmosphere 995.0 10 > th dose independent rect. 22 8
734 260.31 radiation 20.0 10 < th dose independent rect. 22 8
737 260.31 temperature 10.0 10 > th dose independent rect. 6 16
739 260.31 atmosphere 1015.0 10 < th dose independent rect. 6 16
747 260.34 precipitation 0.1 43200 < th dose independent rect. 16 3
748 260.34 wind 9.0 270 < th dose independent rect. 11 16
749 260.34 precipitation 0.1 43200 < th dose dependent rect. 16 3
755 260.36 wind 9.0 270 < th dose independent rect. 15 7
756 260.36 precipitation 0.1 43200 > th dose dependent rect. 7 2
772 260.41 humidity 50.0 90 > th dose independent rect. 17 18
774 260.42 humidity 50.0 10 > th dose dependent rect. 22 8
780 260.44 radiation 40.0 10 < th dose dependent rect. 22 8
781 260.45 wind 1.0 43200 > th dose independent rect. 2 6
800 260.53 precipitation 0.1 43200 > th dose independent rect. 16 3
814 260.57 wind 1.0 14400 < th dose independent rect. 22 3
862 260.75 humidity 70.0 43200 > th dose independent rect. 17 13
872 260.77 precipitation 0.1 270 < th dose independent rect. 11 16
873 260.77 precipitation 0.1 270 < th dose dependent rect. 11 16
875 260.79 atmosphere 995.0 270 > th dose independent rect. 10 5
882 260.81 atmosphere 1010.0 90 < th dose independent rect. 17 18
883 260.81 wind 7.0 10 < th dose dependent rect. 6 7
891 260.84 temperature 20.0 270 > th dose independent rect. 4 6
893 260.84 wind 9.0 43200 < th dose dependent rect. 3 6
902 260.89 humidity 90.0 43200 < th dose dependent rect. 18 3
905 260.90 humidity 50.0 43200 > th dose dependent sin 16 NA
926 260.98 precipitation 0.1 43200 < th dose independent rect. 7 2
928 260.98 precipitation 0.1 43200 < th dose dependent rect. 7 2
933 260.99 humidity 90.0 43200 > th dose dependent rect. 9 1
962 261.05 precipitation 0.1 30 < th dose independent rect. 22 8
963 261.05 wind 5.0 10 < th dose independent rect. 6 16
964 261.05 precipitation 0.1 30 < th dose dependent rect. 22 8
974 261.07 wind 9.0 10 < th dose dependent rect. 22 8
982 261.10 wind 3.0 14400 < th dose independent rect. 11 4
998 261.15 precipitation 0.1 270 < th dose independent rect. 10 18
1000 261.15 precipitation 0.1 270 < th dose dependent rect. 10 18