BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0408900 Os05g0408900|AK064944
         (720 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0408900  Similar to 1-D-deoxyxylulose 5-phosphate synthase  1424   0.0  
Os07g0190000  Similar to 1-deoxy-D-xylulose 5-phosphate synt...  1048   0.0  
Os06g0142900  Deoxyxylulose-5-phosphate synthase family protein   632   0.0  

>Os05g0408900 Similar to 1-D-deoxyxylulose 5-phosphate synthase
          Length = 720

 Score = 1424 bits (3686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/720 (96%), Positives = 695/720 (96%)

Query: 1   MALTTFSISRGGFVGALPQEGHFAPAAAELSLHKLQSRPHKAXXXXXXXXXXXXXTEREA 60
           MALTTFSISRGGFVGALPQEGHFAPAAAELSLHKLQSRPHKA             TEREA
Sbjct: 1   MALTTFSISRGGFVGALPQEGHFAPAAAELSLHKLQSRPHKARRRSSSSISASLSTEREA 60

Query: 61  AEYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVE 120
           AEYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVE
Sbjct: 61  AEYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVE 120

Query: 121 LTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSF 180
           LTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSF
Sbjct: 121 LTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSF 180

Query: 181 GTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 240
           GTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL
Sbjct: 181 GTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVIL 240

Query: 241 NDNKQVSLPTATLDGPAPPVGXXXXXXXXXXXXRPLRELREVAKGVTKQIGGSVHELAAK 300
           NDNKQVSLPTATLDGPAPPVG            RPLRELREVAKGVTKQIGGSVHELAAK
Sbjct: 241 NDNKQVSLPTATLDGPAPPVGALSSALSKLQSSRPLRELREVAKGVTKQIGGSVHELAAK 300

Query: 301 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEK 360
           VDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEK
Sbjct: 301 VDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEK 360

Query: 361 GRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHA 420
           GRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHA
Sbjct: 361 GRGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHA 420

Query: 421 AMGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVV 480
           AMGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVV
Sbjct: 421 AMGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVV 480

Query: 481 HDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATA 540
           HDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATA
Sbjct: 481 HDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATA 540

Query: 541 AAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAA 600
           AAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAA
Sbjct: 541 AAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAA 600

Query: 601 ASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDG 660
           ASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDG
Sbjct: 601 ASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDG 660

Query: 661 LLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIMTVPNA 720
           LLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIMTVPNA
Sbjct: 661 LLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAIMTVPNA 720



>Os07g0190000 Similar to 1-deoxy-D-xylulose 5-phosphate synthase 2 precursor
          Length = 713

 Score = 1048 bits (2709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/653 (76%), Positives = 560/653 (85%)

Query: 62  EYHSQRPPTPLLDTVNYPIHMKNLSLKELQQLADELRSDVIFHVSKTGGHLGSSLGVVEL 121
           +Y  ++P TPLLDTVNYP+HMKNLS  EL+QLA ELR++++  VSKTGGHL SSLGVVEL
Sbjct: 60  DYSGEKPATPLLDTVNYPVHMKNLSTPELEQLAAELRAEIVHTVSKTGGHLSSSLGVVEL 119

Query: 122 TVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEYDSFG 181
            VALH+VF+TP+DKI+WDVGHQ+YPHKILTGRR +M T+RQT+GL+GF KR ES +D+FG
Sbjct: 120 AVALHHVFDTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTSGLAGFPKRDESAHDAFG 179

Query: 182 TGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILN 241
            GHSST+ISAALGMAV RDL G KN+V++VIGDGAMTAGQAYEAMNN+GYLDS+MIV+LN
Sbjct: 180 AGHSSTSISAALGMAVARDLLGKKNHVISVIGDGAMTAGQAYEAMNNSGYLDSNMIVVLN 239

Query: 242 DNKQVSLPTATLDGPAPPVGXXXXXXXXXXXXRPLRELREVAKGVTKQIGGSVHELAAKV 301
           DNKQVSLPTATLDGPA PVG              LR LRE AK VTKQIGG  HE+AAKV
Sbjct: 240 DNKQVSLPTATLDGPATPVGALSKALTKLQSSTKLRRLREAAKTVTKQIGGQAHEVAAKV 299

Query: 302 DEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVVTEKG 361
           DEYARGM+S SGSTLFEELGLYYIGPVDGH++DDL+ I  +VKS    GPVL+H+VTEKG
Sbjct: 300 DEYARGMVSASGSTLFEELGLYYIGPVDGHSVDDLVAIFNKVKSMPAPGPVLVHIVTEKG 359

Query: 362 RGYPYAERAADKYHGVAKFDPATGKQFKSPAKTLSYTNYFAEALIAEAEQDNRVVAIHAA 421
           +GYP AE AAD+ HGV KFDP TG+QFKS   TLSYT YFAEALI EAE D++VV IHAA
Sbjct: 360 KGYPPAEAAADRMHGVVKFDPTTGRQFKSKCSTLSYTQYFAEALIREAEADDKVVGIHAA 419

Query: 422 MGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRGYDQVVH 481
           MGGGTGLNYF +RFP RCFDVGIAEQHAVTFAAGLA EGLKPFCAIYSSFLQRGYDQVVH
Sbjct: 420 MGGGTGLNYFHKRFPERCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSSFLQRGYDQVVH 479

Query: 482 DVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELCHMVATAA 541
           DVDLQ+LPVRFAMDRAGLVGADGPTHCGAFDV YMACLPNMVVMAP+DEAEL HMVATAA
Sbjct: 480 DVDLQRLPVRFAMDRAGLVGADGPTHCGAFDVAYMACLPNMVVMAPADEAELMHMVATAA 539

Query: 542 AIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYGSAVQYCLAAA 601
           AIDDRPSCFR+PRGNGIG  LPPN+KG PLEVGKGRVL+ G RVALLGYG+ VQ C+ AA
Sbjct: 540 AIDDRPSCFRFPRGNGIGAVLPPNHKGTPLEVGKGRVLVGGNRVALLGYGTMVQACMKAA 599

Query: 602 SLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGL 661
             ++ HG+ VTVADARFCKPLD  LIR LA+ HEVL+TVEEGSIGGFGSHVA +++L GL
Sbjct: 600 EALKEHGIYVTVADARFCKPLDTGLIRELAAEHEVLVTVEEGSIGGFGSHVAHYLSLSGL 659

Query: 662 LDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714
           LDG LK R + LPDRYIDHG+P DQL EAGLTP HIAATV ++LG+  EAL +
Sbjct: 660 LDGPLKLRSMFLPDRYIDHGAPVDQLEEAGLTPRHIAATVLSLLGRPLEALQL 712



>Os06g0142900 Deoxyxylulose-5-phosphate synthase family protein
          Length = 562

 Score =  632 bits (1630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/556 (55%), Positives = 386/556 (69%), Gaps = 13/556 (2%)

Query: 118 VVELTVALHYVFNTPQDKILWDVGHQSYPHKILTGRRDKMPTMRQTNGLSGFTKRSESEY 177
           VVEL +A+HYVFN P DKILWD G  +Y HKILTGRR    T++Q  GLSGFT R ESEY
Sbjct: 14  VVELAIAIHYVFNAPMDKILWDAGQHTYAHKILTGRRSLFHTIKQRKGLSGFTSRFESEY 73

Query: 178 DSFGTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMI 237
           D FG GH   ++SA LGMAV RDL G KN +V VI +    AGQ YEAM +AG+LDS+M+
Sbjct: 74  DPFGAGHGCNSLSAGLGMAVARDLGGRKNRIVTVISNWTTMAGQVYEAMGHAGFLDSNMV 133

Query: 238 VILNDNKQVSLPTATLDGPAPPVGXXXXXXXXXXXXRPLRELREVAKGVTKQIGGSVHEL 297
           VILND++   LP A        +             +  R+ RE AKG++K  G  +HE 
Sbjct: 134 VILNDSRHTLLPKADSQSKMS-INALSSALSKVQSSKGFRKFREAAKGLSKWFGKGMHEF 192

Query: 298 AAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHVV 357
           AAK+DEYARGMI   G+TLFEELGLYYIGP+DG+NIDDLI +L+EV +  +TGPVL+HV+
Sbjct: 193 AAKIDEYARGMIGPHGATLFEELGLYYIGPIDGNNIDDLICVLKEVSTLDSTGPVLVHVI 252

Query: 358 TE--KGRGYPYAERAADKYHGVAKFDPATGKQ----FKSPAKTLSYTNYFAEALIAEAEQ 411
           TE  K  G  +         G     P    Q    F     + +Y + F E+LIAEAE 
Sbjct: 253 TENEKDSGGEFNSEITPDEEG-----PPDSSQDILKFLENGLSRTYNDCFVESLIAEAEN 307

Query: 412 DNRVVAIHAAMGGGTGLNYFLRRFPNRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSF 471
           D  +V +H  MG    +  F  RFP+R FD+GIAEQHAVTF+AGLAC GLKPFC I S+F
Sbjct: 308 DKHIVVVHGGMGIDRSIQLFQSRFPDRFFDLGIAEQHAVTFSAGLACGGLKPFCIIPSTF 367

Query: 472 LQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEA 531
           LQR YDQ+V DVD+QK+PVRFA+  AGLVG++GPT+ G FD+T+M+CLPNM+VM+PS+E 
Sbjct: 368 LQRAYDQIVEDVDMQKIPVRFAITSAGLVGSEGPTNSGPFDITFMSCLPNMIVMSPSNED 427

Query: 532 ELCHMVATAAAIDDRPSCFRYPRGNGIGVPLPPNYKGVPLEVGKGRVLLEGERVALLGYG 591
           EL  MVATAA ++DRP CFRYP+G  +G      Y G PLE+GKG +L EG+ +A LGYG
Sbjct: 428 ELIDMVATAAMVEDRPICFRYPKGAIVGTSGTLAY-GNPLEIGKGEILAEGKEIAFLGYG 486

Query: 592 SAVQYCLAAASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSH 651
             VQ CL A SL+   G++ TVA+ARFCKPLD  LIR L   H+ L+TVEEG++GGFGSH
Sbjct: 487 DVVQRCLIARSLLFNFGIQATVANARFCKPLDIDLIRMLCQQHDFLITVEEGTVGGFGSH 546

Query: 652 VAQFMALDGLLDGKLK 667
           V+QF++LDGLLDGK+K
Sbjct: 547 VSQFISLDGLLDGKIK 562



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,407,748
Number of extensions: 1126252
Number of successful extensions: 2539
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2536
Number of HSP's successfully gapped: 3
Length of query: 720
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 612
Effective length of database: 11,396,689
Effective search space: 6974773668
Effective search space used: 6974773668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)