BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0189700 Os07g0189700|AK099833
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0189700 Conserved hypothetical protein 394 e-110
Os07g0189800 Conserved hypothetical protein 289 1e-78
Os03g0850800 Conserved hypothetical protein 177 7e-45
Os07g0475000 Conserved hypothetical protein 175 2e-44
Os08g0102800 Conserved hypothetical protein 102 3e-22
>Os07g0189700 Conserved hypothetical protein
Length = 225
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/197 (95%), Positives = 189/197 (95%)
Query: 29 EQFHAVVFTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGDPTYDVEWTNGTSYFFNA 88
EQFHAVVFTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGDPTYDVEWTNGTSYFFNA
Sbjct: 29 EQFHAVVFTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGDPTYDVEWTNGTSYFFNA 88
Query: 89 TSCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTHRPVRWNF 148
TSCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTHRPVRWNF
Sbjct: 89 TSCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTHRPVRWNF 148
Query: 149 FNGMQQHVMSFEVGGVLEDSKWQAPARCFSDQHTVIADPGAATVTDDRVEGEDGKLDVMN 208
FNGMQQHVMSFEVGGVLEDSKWQAPARCFSDQHTVIADPGAATVTDDRVEGEDGKLDVMN
Sbjct: 149 FNGMQQHVMSFEVGGVLEDSKWQAPARCFSDQHTVIADPGAATVTDDRVEGEDGKLDVMN 208
Query: 209 AFFRFVGXXXXXXXXSV 225
AFFRFVG SV
Sbjct: 209 AFFRFVGAPAAAAAASV 225
>Os07g0189800 Conserved hypothetical protein
Length = 226
Score = 289 bits (740), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 134/187 (71%), Positives = 155/187 (82%), Gaps = 9/187 (4%)
Query: 29 EQFHAVVFTNLTGS--GGRLQLIDLYYDWPRGRNLNLIRGQLSGDPTYDVEWTNGTSYFF 86
E+FHAV+FTNLT + GG+LQ+ DLYYDWP GRNLNL+ GQLSGDP YDVEWTNGTSY+F
Sbjct: 36 ERFHAVLFTNLTQTSGGGKLQMTDLYYDWPGGRNLNLVAGQLSGDPVYDVEWTNGTSYYF 95
Query: 87 NATSCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTHRPVRW 146
++ SCRT LFPVG+LPPDWLAAGA YLGRE V GFDCH+WTKVD +WYYEDVVTHRPVRW
Sbjct: 96 DSASCRTLLFPVGILPPDWLAAGAAYLGREAVDGFDCHVWTKVDFIWYYEDVVTHRPVRW 155
Query: 147 NFFNGMQQHVMSFEVGGVLEDSKWQAPARCFSDQHTVIADPGAATVTDDRVEGEDGKLDV 206
NF+ GMQQHVMSFEVGG LEDSKWQAPA CF+DQ AAT +D + EDG++D
Sbjct: 156 NFYTGMQQHVMSFEVGGALEDSKWQAPAYCFNDQE-------AATNSDTANDNEDGEVDA 208
Query: 207 MNAFFRF 213
M++ +F
Sbjct: 209 MSSLLKF 215
>Os03g0850800 Conserved hypothetical protein
Length = 214
Score = 177 bits (448), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 112/171 (65%), Gaps = 14/171 (8%)
Query: 30 QFHAVVFTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGD-PTYDVEWTNGTSYFFNA 88
QFHA + G+ L L DL+YDWP GRNL++IR QL+ D P YD EW NGTS+F+
Sbjct: 35 QFHAKLLMEFHGN---LSLADLWYDWPGGRNLHVIRYQLAADEPFYDNEWNNGTSFFYTP 91
Query: 89 T--SCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTHRPVRW 146
+CR+ VG+LPP+WL G+VYLGR GFDCH+W K D + YYED +T RPV+W
Sbjct: 92 ARRACRSAAVGVGILPPNWLVPGSVYLGRHPADGFDCHVWAKADFITYYEDTLTKRPVKW 151
Query: 147 NFFNGMQQHVMSFEVGGVLEDSKWQAPARCF--------SDQHTVIADPGA 189
F+ G HVMSFE G VLED++WQAP CF S+ + +I++P A
Sbjct: 152 VFYTGRTSHVMSFEEGAVLEDAEWQAPEYCFGKGDETETSNDNALISEPVA 202
>Os07g0475000 Conserved hypothetical protein
Length = 246
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 113/159 (71%), Gaps = 12/159 (7%)
Query: 31 FHAVVFTNLT-----GSGGRLQLIDLYYDWPRGRNLNLIRGQLSG--DPTYDVEWTNGTS 83
FHA +FTNLT +G L++ DLYYDW R RNLNLIR QL+ DP YDVEW NGT+
Sbjct: 38 FHARLFTNLTNHSAASTGPPLRVADLYYDWSRRRNLNLIRYQLAAADDPLYDVEWDNGTT 97
Query: 84 YFFNATSCRTKLFPVGLLPPDWLA--AGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTH 141
++F++ SCRT+ FPVG+L P WLA G VYLGR G +C +W K+ V YY++V T
Sbjct: 98 FYFDSRSCRTERFPVGVLRPGWLADGGGVVYLGRWRTGGIECDVWDKLGFVVYYQEVATG 157
Query: 142 RPVRWNFFN--GMQQHVMSFEVGGVLE-DSKWQAPARCF 177
RPVRWNF + G+QQ VMSFEVG LE DS+WQAPA CF
Sbjct: 158 RPVRWNFLDKTGIQQFVMSFEVGVTLEDDSQWQAPAHCF 196
>Os08g0102800 Conserved hypothetical protein
Length = 156
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%), Gaps = 7/81 (8%)
Query: 29 EQFHAVV----FTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGDPT-YDVEWTNGTS 83
E+FHAVV TN GGRLQLI++YYDWP GR+LN++R QLSGDP Y+VEW NGTS
Sbjct: 42 ERFHAVVVSINLTNHDRGGGRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNGTS 101
Query: 84 YFFN--ATSCRTKLFPVGLLP 102
Y F+ A+SCRT FPVG+LP
Sbjct: 102 YLFDTAASSCRTFQFPVGILP 122
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,790,711
Number of extensions: 343402
Number of successful extensions: 503
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 5
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)