BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0182100 Os07g0182100|AK104002
(329 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0182100 Similar to Tryptophan synthase alpha chain 507 e-144
Os03g0797000 Similar to Indole synthase 383 e-106
Os03g0797400 Similar to Indole-3-glycerol phosphate lyase 325 2e-89
Os03g0797550 Similar to Indole-3-glycerol phosphate lyase (... 319 2e-87
AK102456 80 2e-15
>Os07g0182100 Similar to Tryptophan synthase alpha chain
Length = 329
Score = 507 bits (1305), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/269 (94%), Positives = 255/269 (94%)
Query: 42 VSFRGVPAPMVAIRAEAAAVGEDERVISGTFAKLKEQGKTAFIPFITAGDPDLATTAKAL 101
VSFRGVPAPMVAIRAEAAAVGEDERVISGTFAKLKEQGKTAFIPFITAGDPDLATTAKAL
Sbjct: 42 VSFRGVPAPMVAIRAEAAAVGEDERVISGTFAKLKEQGKTAFIPFITAGDPDLATTAKAL 101
Query: 102 KILDACGSDLIELGVPYSDPLADGPVIQASATRALSKGTTFEDVISMVKEVIPELSCPVA 161
KILDACGSDLIELGVPYSDPLADGPVIQASATRALSKGTTFEDVISMVKEVIPELSCPVA
Sbjct: 102 KILDACGSDLIELGVPYSDPLADGPVIQASATRALSKGTTFEDVISMVKEVIPELSCPVA 161
Query: 162 LFTYYNPILKRGIANFMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNXXXXXXXXXXX 221
LFTYYNPILKRGIANFMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNN
Sbjct: 162 LFTYYNPILKRGIANFMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNLELVLLTTPTT 221
Query: 222 XXXRMEKITKASEGFIYLVSTVGVTGARANVSGKVQSLLQDIKQVTDKAVAVGFGISTPE 281
RMEKITKASEGFIYLVSTVGVTGARANVSGKVQSLLQDIKQVTDKAVAVGFGISTPE
Sbjct: 222 PTERMEKITKASEGFIYLVSTVGVTGARANVSGKVQSLLQDIKQVTDKAVAVGFGISTPE 281
Query: 282 HVKQIAGWGADGVIIGSAMVRQLGEAASP 310
HVKQIAGWGADGVIIGSAMVRQLGEAASP
Sbjct: 282 HVKQIAGWGADGVIIGSAMVRQLGEAASP 310
>Os03g0797000 Similar to Indole synthase
Length = 279
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/250 (73%), Positives = 217/250 (86%)
Query: 61 VGEDERVISGTFAKLKEQGKTAFIPFITAGDPDLATTAKALKILDACGSDLIELGVPYSD 120
VG +R ++ TF++L+EQGKTAFIPFITA DPDLATT+KALKILD+CGSD+IELGVPYSD
Sbjct: 11 VGAGKRGVAETFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSDVIELGVPYSD 70
Query: 121 PLADGPVIQASATRALSKGTTFEDVISMVKEVIPELSCPVALFTYYNPILKRGIANFMTV 180
PLADGPVIQA+ATRAL KG TF+ VI+M+K VIPELSCP+ +FTYYNPILKRG++NFM +
Sbjct: 71 PLADGPVIQAAATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPILKRGVSNFMAI 130
Query: 181 VKEAGVHGLVVPDVPLEETNILRSEAAKNNXXXXXXXXXXXXXXRMEKITKASEGFIYLV 240
+K+AGVHGLVVPD+PLEET +LR+EA + RM++I KASEGFIYLV
Sbjct: 131 IKQAGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIAKASEGFIYLV 190
Query: 241 STVGVTGARANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGVIIGSAM 300
S+VGVTGAR+NV+ +V+ LLQ+IK+VTDK VAVGFGISTPEHVKQIAGWGADGVIIGSA+
Sbjct: 191 SSVGVTGARSNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAI 250
Query: 301 VRQLGEAASP 310
VRQLGEAASP
Sbjct: 251 VRQLGEAASP 260
>Os03g0797400 Similar to Indole-3-glycerol phosphate lyase
Length = 324
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 157/243 (64%), Positives = 189/243 (77%)
Query: 68 ISGTFAKLKEQGKTAFIPFITAGDPDLATTAKALKILDACGSDLIELGVPYSDPLADGPV 127
+S T ++L E+GKTAFIP+ITAGDPD+ TTA+AL++LDACG+D+IELGVP+SDP DGPV
Sbjct: 63 VSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPYNDGPV 122
Query: 128 IQASATRALSKGTTFEDVISMVKEVIPELSCPVALFTYYNPILKRGIANFMTVVKEAGVH 187
IQASA RALS G T + ++SM+ EV PELSCPV LF+Y PI++RG ANF KEAGV
Sbjct: 123 IQASAARALSAGATMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAKEAGVQ 182
Query: 188 GLVVPDVPLEETNILRSEAAKNNXXXXXXXXXXXXXXRMEKITKASEGFIYLVSTVGVTG 247
GL+VPD+P E RSE KNN RM+ IT AS GF+YLVS GVTG
Sbjct: 183 GLIVPDLPYLEACSFRSEVIKNNLELVLLTTPTTPPDRMKAITAASGGFVYLVSVNGVTG 242
Query: 248 ARANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEA 307
+R +V+ +V+ LLQ+IKQVTDKAV VG+GISTP+HV+QIA WGADGVIIGSAMVRQLGEA
Sbjct: 243 SRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVRQLGEA 302
Query: 308 ASP 310
ASP
Sbjct: 303 ASP 305
>Os03g0797550 Similar to Indole-3-glycerol phosphate lyase (Fragment)
Length = 323
Score = 319 bits (817), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/276 (61%), Positives = 205/276 (74%), Gaps = 7/276 (2%)
Query: 42 VSFRGVPAPMVAI-----RAEAAAVGED--ERVISGTFAKLKEQGKTAFIPFITAGDPDL 94
V+ R +PA VA RA A A E +S T ++L+E+GK AFIP+ITAGDPD+
Sbjct: 29 VAARKLPAAAVAASLTLDRAPAPAGAERGMSSSVSRTMSRLREKGKAAFIPYITAGDPDM 88
Query: 95 ATTAKALKILDACGSDLIELGVPYSDPLADGPVIQASATRALSKGTTFEDVISMVKEVIP 154
TTA+AL++LDACG+D+IELGVP+SDP DGPVIQASA RAL+ G T + V+SM+ EV P
Sbjct: 89 GTTAEALRVLDACGADVIELGVPFSDPYTDGPVIQASAARALAAGATMDGVMSMLAEVTP 148
Query: 155 ELSCPVALFTYYNPILKRGIANFMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNXXXX 214
ELSCPV LF+Y+ PI++RG ANF KEAGV GL+VPD+P ET+ RSEA KNN
Sbjct: 149 ELSCPVVLFSYFGPIVRRGPANFTAAAKEAGVQGLIVPDLPYVETSTFRSEAIKNNLELV 208
Query: 215 XXXXXXXXXXRMEKITKASEGFIYLVSTVGVTGARANVSGKVQSLLQDIKQVTDKAVAVG 274
RM+ IT AS GF+YLVS GVTG+ NV+ +V+ LLQ+IKQVTDKAV VG
Sbjct: 209 LLTTPATPADRMKAITAASGGFVYLVSVNGVTGSIQNVNPRVEHLLQEIKQVTDKAVCVG 268
Query: 275 FGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASP 310
FGISTP+HV+QIA WGADGVIIGSAMVRQLGEAASP
Sbjct: 269 FGISTPDHVRQIADWGADGVIIGSAMVRQLGEAASP 304
>AK102456
Length = 778
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 273 VGFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASP 310
GFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASP
Sbjct: 722 CGFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASP 759
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,629,433
Number of extensions: 275629
Number of successful extensions: 703
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 5
Length of query: 329
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 228
Effective length of database: 11,762,187
Effective search space: 2681778636
Effective search space used: 2681778636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)