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Os03g0797400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Indole-3-glycerol phosphate lyase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.08 (0.0867) R2 : 0.498
β1 : -4.89 (0.426) R2dD : 0.312 R2D : 0.123
β2 : 2.85 (0.223) R2dC : 0.222 R2C : 0.0699
β3 : -4.74 (0.434) R2dE : 0.196 R2E : 0.031
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.13 (1.62) R2dD*E : 0.0324 R2D*E : -0.0438
γ1 : 0.406 (0.192) R2dN8 : 0.00796 R2N8 : 0.0422
σ : 1.54
deviance : 1087.24
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_____
C
peak time of C : 14.6
E
wheather : radiation
threshold : 1.269
memory length : 4239
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.02
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1080.6 1.54 9.1 -5.13 2.83 -4.54 -1.61 7.3 0.377 14.7 1.206 4238 4.2 --
1118.64 1.56 9.02 -4.02 2.37 -4.33 -0.983 -- 0.548 15.6 0.7699 4293 4.42 --
1087.24 1.54 9.08 -4.89 2.85 -4.74 -- 6.13 0.406 14.6 1.269 4239 4.02 --
1110.3 1.55 8.98 -3.91 2.8 -5.24 -- -- 0.68 14.9 0.8423 4250 3.56 --
1132.82 1.57 9.18 -4.65 -- -4.72 -- 6.49 0.292 -- 0.6577 7687 4.16 --
1467.73 1.8 8.85 -2.93 2.12 -- -1.39 -- 1.34 16.3 -- -- -- --
1472.47 1.8 8.85 -2.94 2.11 -- -- -- 1.33 16.1 -- -- -- --
1143.52 1.57 8.94 -4.04 -- -5.19 -- -- 0.842 -- 0.0595 7689 4.26 --
1489.57 1.8 8.86 -- 2.97 -4.6 -- -- 1.19 14 1.372 4205 4.42 --
1713.81 1.93 8.85 -3.02 -- -- -- -- 1.28 -- -- -- -- --
1700.08 1.93 8.78 -- 2.16 -- -- -- 1.66 16.1 -- -- -- --
1532.13 1.82 8.88 -- -- -4.96 -- -- 1.07 -- 0.67 7688 4.77 --
1955.07 2.06 8.77 -- -- -- -- -- 1.61 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1078.98 radiation 30 14400 < th dose independent rect. 18 13
7 1085.53 radiation 30 14400 < th dose independent rect. 24 7
9 1089.69 radiation 20 14400 > th dose dependent rect. 6 1
22 1089.82 radiation 30 14400 < th dose independent rect. 2 5
25 1092.31 atmosphere 1015 43200 < th dose independent rect. 14 3
28 1092.88 atmosphere 1015 43200 > th dose independent rect. 13 5
30 1092.94 atmosphere 1015 43200 < th dose independent rect. 13 6
34 1093.02 radiation 30 14400 < th dose independent rect. 6 1
46 1093.98 atmosphere 1015 43200 > th dose independent rect. 14 1
54 1095.52 radiation 20 14400 > th dose independent rect. 6 1
88 1097.42 wind 9 43200 < th dose independent rect. 22 1
90 1097.65 wind 9 43200 > th dose dependent rect. 21 2
118 1099.72 wind 9 43200 < th dose independent rect. 19 1
129 1101.35 wind 7 43200 > th dose independent rect. 22 1
144 1103.38 radiation 1 14400 < th dose dependent rect. 9 3
149 1103.87 radiation 1 14400 < th dose dependent rect. 6 9
154 1104.48 radiation 1 14400 < th dose independent rect. 7 7
155 1104.54 wind 5 43200 < th dose independent rect. 14 11
156 1104.57 wind 5 43200 < th dose independent rect. 11 17
162 1104.81 wind 5 43200 > th dose independent rect. 11 17
163 1104.82 radiation 1 14400 > th dose independent rect. 7 7
187 1105.27 wind 5 43200 > th dose independent rect. 13 13
189 1105.29 wind 5 43200 > th dose independent rect. 14 11
204 1105.67 humidity 70 43200 < th dose independent rect. 4 7
206 1105.69 wind 9 43200 > th dose dependent rect. 18 1
216 1106.16 humidity 70 43200 < th dose dependent rect. 10 1
229 1106.32 humidity 70 43200 > th dose independent rect. 4 7
235 1106.49 atmosphere 1015 43200 > th dose dependent rect. 23 3
251 1106.68 wind 5 43200 < th dose independent sin 17 NA
257 1106.82 radiation 10 43200 < th dose independent rect. 17 13
262 1107.01 wind 5 43200 < th dose independent rect. 15 6
274 1107.33 wind 5 43200 > th dose independent sin 17 NA
282 1107.54 wind 7 43200 < th dose independent rect. 16 14
289 1107.69 temperature 15 43200 < th dose independent rect. 10 1
292 1107.83 temperature 15 43200 > th dose independent rect. 10 1
305 1108.20 wind 7 43200 > th dose independent rect. 16 14
306 1108.24 wind 7 43200 < th dose independent rect. 14 22
307 1108.27 humidity 70 43200 > th dose independent rect. 19 1
310 1108.29 wind 5 43200 > th dose independent rect. 14 7
314 1108.37 radiation 1 43200 < th dose dependent rect. 9 1
316 1108.39 radiation 1 14400 < th dose independent rect. 10 2
319 1108.41 wind 5 43200 > th dose independent rect. 15 5
342 1108.72 humidity 60 43200 > th dose independent rect. 21 17
356 1108.89 wind 7 43200 > th dose independent rect. 14 22
361 1109.03 wind 7 43200 < th dose independent rect. 21 22
365 1109.06 radiation 1 4320 < th dose dependent rect. 18 16
379 1109.27 radiation 1 4320 < th dose dependent rect. 15 20
383 1109.37 radiation 1 14400 > th dose independent rect. 10 2
390 1109.44 radiation 30 43200 < th dose independent rect. 16 16
393 1109.47 wind 3 43200 > th dose dependent rect. 13 13
397 1109.54 wind 9 43200 > th dose independent rect. 19 1
407 1109.65 humidity 60 43200 > th dose independent rect. 2 11
409 1109.66 humidity 70 43200 < th dose independent rect. 19 1
413 1109.68 wind 3 43200 > th dose dependent rect. 11 16
427 1109.78 wind 7 43200 < th dose independent rect. 16 23
431 1109.87 wind 7 43200 < th dose independent rect. 14 20
437 1109.93 humidity 60 43200 < th dose independent rect. 18 20
443 1109.99 radiation 10 43200 < th dose independent rect. 5 1
475 1110.36 wind 7 43200 > th dose independent rect. 21 23
482 1110.44 atmosphere 1015 43200 > th dose dependent rect. 13 1
483 1110.44 atmosphere 1015 43200 > th dose dependent rect. 19 7
485 1110.46 wind 5 43200 < th dose independent rect. 12 2
493 1110.50 radiation 1 4320 < th dose dependent sin 11 NA
502 1110.57 wind 7 43200 > th dose independent rect. 14 20
512 1110.68 atmosphere 1015 43200 > th dose independent sin 22 NA
519 1110.76 wind 7 43200 > th dose independent rect. 16 23
521 1110.78 wind 7 43200 < th dose independent rect. 24 1
524 1110.79 wind 5 43200 > th dose dependent rect. 11 21
532 1110.84 wind 5 43200 > th dose independent rect. 12 2
546 1110.98 radiation 1 4320 < th dose dependent rect. 4 6
554 1111.02 radiation 1 4320 < th dose dependent rect. 1 9
573 1111.17 wind 7 43200 < th dose independent sin 13 NA
587 1111.22 wind 5 43200 > th dose dependent rect. 13 19
611 1111.37 humidity 80 43200 < th dose dependent rect. 19 1
632 1111.47 radiation 1 4320 < th dose dependent rect. 22 12
633 1111.48 atmosphere 1015 43200 < th dose independent sin 22 NA
659 1111.65 wind 7 43200 < th dose independent no NA NA
662 1111.66 wind 7 43200 > th dose independent sin 13 NA
681 1111.74 wind 3 43200 > th dose dependent sin 17 NA
722 1112.00 wind 5 43200 < th dose independent rect. 10 5
733 1112.06 atmosphere 1015 43200 > th dose dependent rect. 19 3
758 1112.24 wind 7 43200 < th dose independent rect. 2 23
779 1112.37 wind 5 43200 > th dose independent rect. 15 2
805 1112.57 wind 5 43200 < th dose independent rect. 10 7
830 1112.74 wind 5 43200 > th dose independent rect. 10 5
865 1112.89 wind 5 43200 < th dose independent rect. 15 2
875 1112.92 wind 7 43200 > th dose independent no NA NA
884 1112.96 humidity 60 43200 > th dose independent sin 5 NA
918 1113.20 wind 5 43200 > th dose independent rect. 10 7
938 1113.29 wind 3 43200 > th dose dependent rect. 14 7
960 1113.47 radiation 20 43200 < th dose dependent rect. 19 10
969 1113.53 wind 5 43200 < th dose independent rect. 3 18
972 1113.55 wind 5 43200 > th dose independent rect. 3 18
981 1113.57 wind 7 43200 > th dose independent rect. 24 1
986 1113.58 wind 7 43200 > th dose independent rect. 2 23
998 1113.61 wind 7 43200 > th dose dependent rect. 24 1