BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0797400 Os03g0797400|AK072595
(324 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0797400 Similar to Indole-3-glycerol phosphate lyase 560 e-160
Os03g0797550 Similar to Indole-3-glycerol phosphate lyase (... 484 e-137
Os07g0182100 Similar to Tryptophan synthase alpha chain 341 5e-94
Os03g0797000 Similar to Indole synthase 328 2e-90
AK102456 98 7e-21
>Os03g0797400 Similar to Indole-3-glycerol phosphate lyase
Length = 324
Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/324 (87%), Positives = 282/324 (87%)
Query: 1 MAFTVKXXXXXXXXXXXXXXXXXXKLGAAPGRVAVRKLTAAATSLRLDRAPAAPATERGL 60
MAFTVK KLGAAPGRVAVRKLTAAATSLRLDRAPAAPATERGL
Sbjct: 1 MAFTVKASSPSSPAASSSSSSAPAKLGAAPGRVAVRKLTAAATSLRLDRAPAAPATERGL 60
Query: 61 SSVSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPYNDG 120
SSVSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPYNDG
Sbjct: 61 SSVSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPYNDG 120
Query: 121 PVIQXXXXXXXXXXXTMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAKEAG 180
PVIQ TMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAKEAG
Sbjct: 121 PVIQASAARALSAGATMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAKEAG 180
Query: 181 VQGLIVPDLPYLEACSFRSEVIKNNXXXXXXXXXXXXXDRMKAITAASGGFVYLVSVNGV 240
VQGLIVPDLPYLEACSFRSEVIKNN DRMKAITAASGGFVYLVSVNGV
Sbjct: 181 VQGLIVPDLPYLEACSFRSEVIKNNLELVLLTTPTTPPDRMKAITAASGGFVYLVSVNGV 240
Query: 241 TGSRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVRQLG 300
TGSRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVRQLG
Sbjct: 241 TGSRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVRQLG 300
Query: 301 EAASPKQGLKRLEKYARSLKNALP 324
EAASPKQGLKRLEKYARSLKNALP
Sbjct: 301 EAASPKQGLKRLEKYARSLKNALP 324
>Os03g0797550 Similar to Indole-3-glycerol phosphate lyase (Fragment)
Length = 323
Score = 484 bits (1245), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/327 (76%), Positives = 260/327 (79%), Gaps = 7/327 (2%)
Query: 1 MAFTVKXXXXXXXXXXXXXXXXXXKLGAAPGRVAVRKLTAAAT--SLRLDRAPAAPATER 58
MAFTVK L RVA RKL AAA SL LDRAPA ER
Sbjct: 1 MAFTVKASSPSSPATTRLTGA----LHGGAARVAARKLPAAAVAASLTLDRAPAPAGAER 56
Query: 59 GLSS-VSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPY 117
G+SS VSRTMSRL EKGK AFIPYITAGDPDMGTTAEALR+LDACGADVIELGVPFSDPY
Sbjct: 57 GMSSSVSRTMSRLREKGKAAFIPYITAGDPDMGTTAEALRVLDACGADVIELGVPFSDPY 116
Query: 118 NDGPVIQXXXXXXXXXXXTMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAK 177
DGPVIQ TMDG+MSMLAEVTPELSCPVVLFSY GPIVRRGPANFTAAAK
Sbjct: 117 TDGPVIQASAARALAAGATMDGVMSMLAEVTPELSCPVVLFSYFGPIVRRGPANFTAAAK 176
Query: 178 EAGVQGLIVPDLPYLEACSFRSEVIKNNXXXXXXXXXXXXXDRMKAITAASGGFVYLVSV 237
EAGVQGLIVPDLPY+E +FRSE IKNN DRMKAITAASGGFVYLVSV
Sbjct: 177 EAGVQGLIVPDLPYVETSTFRSEAIKNNLELVLLTTPATPADRMKAITAASGGFVYLVSV 236
Query: 238 NGVTGSRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVR 297
NGVTGS Q+VNPRVEHLLQEIKQVTDKAVCVG+GISTPDHVRQIA+WGADGVIIGSAMVR
Sbjct: 237 NGVTGSIQNVNPRVEHLLQEIKQVTDKAVCVGFGISTPDHVRQIADWGADGVIIGSAMVR 296
Query: 298 QLGEAASPKQGLKRLEKYARSLKNALP 324
QLGEAASPKQGLKRLEKYARSLK+ALP
Sbjct: 297 QLGEAASPKQGLKRLEKYARSLKDALP 323
>Os07g0182100 Similar to Tryptophan synthase alpha chain
Length = 329
Score = 341 bits (874), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 27 GAAPGRVAVRKLTAAATSLRLDRAPAAPATERGLSSVSRTMSRLMEKGKTAFIPYITAGD 86
G A GRV+ R + A ++R + A A ER +S T ++L E+GKTAFIP+ITAGD
Sbjct: 36 GGAAGRVSFRGVPAPMVAIRAE-AAAVGEDER---VISGTFAKLKEQGKTAFIPFITAGD 91
Query: 87 PDMGTTAEALRLLDACGADVIELGVPFSDPYNDGPVIQXXXXXXXXXXXTMDGIMSMLAE 146
PD+ TTA+AL++LDACG+D+IELGVP+SDP DGPVIQ T + ++SM+ E
Sbjct: 92 PDLATTAKALKILDACGSDLIELGVPYSDPLADGPVIQASATRALSKGTTFEDVISMVKE 151
Query: 147 VTPELSCPVVLFSYLGPIVRRGPANFTAAAKEAGVQGLIVPDLPYLEACSFRSEVIKNNX 206
V PELSCPV LF+Y PI++RG ANF KEAGV GL+VPD+P E RSE KNN
Sbjct: 152 VIPELSCPVALFTYYNPILKRGIANFMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNL 211
Query: 207 XXXXXXXXXXXXDRMKAITAASGGFVYLVSVNGVTGSRQDVNPRVEHLLQEIKQVTDKAV 266
+RM+ IT AS GF+YLVS GVTG+R +V+ +V+ LLQ+IKQVTDKAV
Sbjct: 212 ELVLLTTPTTPTERMEKITKASEGFIYLVSTVGVTGARANVSGKVQSLLQDIKQVTDKAV 271
Query: 267 CVGYGISTPDHVRQIAEWGADGVIIGSAMVRQLGEAASPKQGLKRLEKYARSLKNALP 324
VG+GISTP+HV+QIA WGADGVIIGSAMVRQLGEAASP++GLK+LE+ A+SLK ALP
Sbjct: 272 AVGFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASPEEGLKKLEELAKSLKAALP 329
>Os03g0797000 Similar to Indole synthase
Length = 279
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/266 (58%), Positives = 199/266 (74%)
Query: 59 GLSSVSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPYN 118
G V+ T SRL E+GKTAFIP+ITA DPD+ TT++AL++LD+CG+DVIELGVP+SDP
Sbjct: 14 GKRGVAETFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSDVIELGVPYSDPLA 73
Query: 119 DGPVIQXXXXXXXXXXXTMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAKE 178
DGPVIQ T D +++ML V PELSCP+V+F+Y PI++RG +NF A K+
Sbjct: 74 DGPVIQAAATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPILKRGVSNFMAIIKQ 133
Query: 179 AGVQGLIVPDLPYLEACSFRSEVIKNNXXXXXXXXXXXXXDRMKAITAASGGFVYLVSVN 238
AGV GL+VPDLP E R+E + + +RMK I AS GF+YLVS
Sbjct: 134 AGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIAKASEGFIYLVSSV 193
Query: 239 GVTGSRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVRQ 298
GVTG+R +VN RVE+LLQEIK+VTDK V VG+GISTP+HV+QIA WGADGVIIGSA+VRQ
Sbjct: 194 GVTGARSNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAIVRQ 253
Query: 299 LGEAASPKQGLKRLEKYARSLKNALP 324
LGEAASP++GLKR+E+YA+++K A+P
Sbjct: 254 LGEAASPEEGLKRVEEYAKNMKAAMP 279
>AK102456
Length = 778
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/56 (80%), Positives = 53/56 (94%)
Query: 269 GYGISTPDHVRQIAEWGADGVIIGSAMVRQLGEAASPKQGLKRLEKYARSLKNALP 324
G+GISTP+HV+QIA WGADGVIIGSAMVRQLGEAASP++GLK+LE+ A+SLK ALP
Sbjct: 723 GFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASPEEGLKKLEELAKSLKAALP 778
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,084,407
Number of extensions: 338525
Number of successful extensions: 989
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 988
Number of HSP's successfully gapped: 5
Length of query: 324
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 223
Effective length of database: 11,762,187
Effective search space: 2622967701
Effective search space used: 2622967701
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)