Os07g0182100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Tryptophan synthase alpha chain.
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Os07g0182100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Tryptophan synthase alpha chain.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.97 | 0.448 | 11.1 | -1.12 | 0.539 | 1.57 | -0.731 | 2.48 | -0.498 | 21.6 | 11.64 | 365 | -- | -- |
| 95.27 | 0.455 | 11.2 | -1.52 | 0.49 | 1.66 | -0.695 | -- | -0.617 | 21.5 | 9.35 | 407 | -- | -- |
| 92.87 | 0.449 | 11.1 | -1.1 | 0.557 | 1.55 | -- | 2.44 | -0.5 | 21.6 | 12.01 | 344 | -- | -- |
| 95.13 | 0.454 | 11.2 | -1.47 | 0.546 | 1.39 | -- | -- | -0.624 | 21.8 | 19 | 375 | -- | -- |
| 104.76 | 0.477 | 11.1 | -1.27 | -- | 1.76 | -- | 1.98 | -0.59 | -- | 16.52 | 533 | -- | -- |
| 124.1 | 0.522 | 11.1 | -1.13 | 0.874 | -- | -0.0376 | -- | -0.366 | 19.7 | -- | -- | -- | -- |
| 124.1 | 0.522 | 11.1 | -1.13 | 0.874 | -- | -- | -- | -0.366 | 19.7 | -- | -- | -- | -- |
| 105.5 | 0.478 | 11.2 | -1.53 | -- | 1.6 | -- | -- | -0.645 | -- | 18.9 | 536 | -- | -- |
| 143.08 | 0.557 | 11.1 | -- | 0.635 | 0.885 | -- | -- | -0.363 | 21.3 | 24.3 | 294 | -- | -- |
| 165.31 | 0.601 | 11.1 | -1.14 | -- | -- | -- | -- | -0.379 | -- | -- | -- | -- | -- |
| 157.71 | 0.587 | 11.1 | -- | 0.883 | -- | -- | -- | -0.241 | 19.6 | -- | -- | -- | -- |
| 158.55 | 0.586 | 11.1 | -- | -- | 1.17 | -- | -- | -0.34 | -- | 24.4 | 458 | -- | -- |
| 199.63 | 0.659 | 11.1 | -- | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.69 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 2 | 86.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 21 | 87.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 36 | 88.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 73 | 89.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 129 | 90.60 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 152 | 91.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 155 | 91.06 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 209 | 91.77 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 211 | 91.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 213 | 91.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 221 | 91.92 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 229 | 91.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 244 | 92.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 14 |
| 287 | 92.45 | temperature | 30 | 720 | > th | dose independent | sin | 6 | NA |
| 302 | 92.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 19 |
| 337 | 92.87 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 348 | 92.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 422 | 93.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 447 | 93.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 498 | 93.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 504 | 93.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 523 | 94.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 539 | 94.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 550 | 94.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 551 | 94.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 600 | 94.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 610 | 94.39 | temperature | 15 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 614 | 94.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 621 | 94.45 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 652 | 94.65 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 660 | 94.68 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 696 | 94.73 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 5 |
| 700 | 94.75 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 731 | 94.84 | atmosphere | 1000 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 753 | 94.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 757 | 94.94 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 2 |
| 790 | 95.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 799 | 95.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 12 |
| 838 | 95.12 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 10 |
| 856 | 95.19 | atmosphere | 1000 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 861 | 95.20 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 906 | 95.30 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |