BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0182100 Os07g0182100|AK104002
(329 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02610.1 | chr4:1147662-1149217 FORWARD LENGTH=276 360 e-100
AT3G54640.1 | chr3:20223331-20225303 REVERSE LENGTH=313 356 1e-98
>AT4G02610.1 | chr4:1147662-1149217 FORWARD LENGTH=276
Length = 275
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/243 (69%), Positives = 199/243 (81%)
Query: 68 ISGTFAKLKEQGKTAFIPFITAGDPDLATTAKALKILDACGSDLIELGVPYSDPLADGPV 127
+S TFA+LK QGK A IP+ITAGDPDL+TTAKALK+LD+CGSD+IELGVPYSDPLADGP
Sbjct: 13 LSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSDPLADGPA 72
Query: 128 IQASATRALSKGTTFEDVISMVKEVIPELSCPVALFTYYNPILKRGIANFMTVVKEAGVH 187
IQA+A R+L KGT F +ISM+KEVIP+LSCP+ALFTYYNPIL+RG+ N+MTV+K AGVH
Sbjct: 73 IQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTVIKNAGVH 132
Query: 188 GLVVPDVPLEETNILRSEAAKNNXXXXXXXXXXXXXXRMEKITKASEGFIYLVSTVGVTG 247
GL+VPDVPLEET LR+EA K+ RM I +ASEGFIYLVS+VGVTG
Sbjct: 133 GLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIYLVSSVGVTG 192
Query: 248 ARANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEA 307
R +V+ KVQSLLQ IK+ T K VAVGFGIS PEHVKQ+A WGADGVI+GSAMV+ LGE+
Sbjct: 193 TRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGSAMVKILGES 252
Query: 308 ASP 310
SP
Sbjct: 253 ESP 255
>AT3G54640.1 | chr3:20223331-20225303 REVERSE LENGTH=313
Length = 312
Score = 356 bits (913), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 167/261 (63%), Positives = 209/261 (80%), Gaps = 5/261 (1%)
Query: 50 PMVAIRAEAAAVGEDERVISGTFAKLKEQGKTAFIPFITAGDPDLATTAKALKILDACGS 109
PM ++ + +G ++ TF +LK+QGK AFIP+ITAGDPDL+TTA+ALK+LDACGS
Sbjct: 38 PMASLSTSSPTLG-----LADTFTQLKKQGKVAFIPYITAGDPDLSTTAEALKVLDACGS 92
Query: 110 DLIELGVPYSDPLADGPVIQASATRALSKGTTFEDVISMVKEVIPELSCPVALFTYYNPI 169
D+IELGVPYSDPLADGPVIQA+ATR+L +GT + ++ M+ +V+P++SCP++LFTYYNPI
Sbjct: 93 DIIELGVPYSDPLADGPVIQAAATRSLERGTNLDSILEMLDKVVPQISCPISLFTYYNPI 152
Query: 170 LKRGIANFMTVVKEAGVHGLVVPDVPLEETNILRSEAAKNNXXXXXXXXXXXXXXRMEKI 229
LKRG+ FM+ ++ GV GLVVPDVPLEET +LR EA N+ RM+ I
Sbjct: 153 LKRGLGKFMSSIRAVGVQGLVVPDVPLEETEMLRKEALNNDIELVLLTTPTTPTERMKLI 212
Query: 230 TKASEGFIYLVSTVGVTGARANVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGW 289
ASEGFIYLVS++GVTGAR++VSGKVQSLL+DIK+ TDK VAVGFGIS PEHVKQIAGW
Sbjct: 213 VDASEGFIYLVSSIGVTGARSSVSGKVQSLLKDIKEATDKPVAVGFGISKPEHVKQIAGW 272
Query: 290 GADGVIIGSAMVRQLGEAASP 310
GADGVI+GSAMV+ LG+A SP
Sbjct: 273 GADGVIVGSAMVKLLGDAKSP 293
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,831,040
Number of extensions: 176423
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 2
Length of query: 329
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 230
Effective length of database: 8,392,385
Effective search space: 1930248550
Effective search space used: 1930248550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)