Os03g0797000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Indole synthase.
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Os03g0797000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Indole synthase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.61 | 0.483 | 6.37 | -0.516 | 0.967 | 1.08 | -1.24 | -1.8 | -0.568 | 8.19 | 24.03 | 110 | -- | -- |
| 109.4 | 0.487 | 6.4 | -0.728 | 0.953 | 1.39 | -1.21 | -- | -0.638 | 8.07 | 22.9 | 156 | -- | -- |
| 109.91 | 0.488 | 6.38 | -0.576 | 0.952 | 1.1 | -- | -1.66 | -0.585 | 8.05 | 23.62 | 175 | -- | -- |
| 113.13 | 0.495 | 6.4 | -0.773 | 0.962 | 1.42 | -- | -- | -0.63 | 8.16 | 22.97 | 156 | -- | -- |
| 144.74 | 0.56 | 6.36 | -0.156 | -- | 1.2 | -- | -3.56 | -0.403 | -- | 30.2 | 527 | -- | -- |
| 132.65 | 0.54 | 6.44 | -1.06 | 0.969 | -- | -1.2 | -- | -0.819 | 7.46 | -- | -- | -- | -- |
| 136.64 | 0.547 | 6.44 | -1.08 | 0.966 | -- | -- | -- | -0.817 | 7.5 | -- | -- | -- | -- |
| 154.98 | 0.58 | 6.4 | -0.715 | -- | 1.36 | -- | -- | -0.512 | -- | 28.69 | 528 | -- | -- |
| 127.27 | 0.525 | 6.37 | -- | 0.948 | 1.77 | -- | -- | -0.505 | 8.35 | 22.99 | 176 | -- | -- |
| 186.6 | 0.638 | 6.47 | -1.07 | -- | -- | -- | -- | -0.802 | -- | -- | -- | -- | -- |
| 167.56 | 0.606 | 6.42 | -- | 0.957 | -- | -- | -- | -0.696 | 7.58 | -- | -- | -- | -- |
| 167.06 | 0.602 | 6.37 | -- | -- | 1.61 | -- | -- | -0.391 | -- | 28.34 | 535 | -- | -- |
| 216.71 | 0.687 | 6.44 | -- | -- | -- | -- | -- | -0.683 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.70 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 2 | 103.83 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 8 | 4 |
| 20 | 104.13 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 26 | 104.48 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 29 | 104.56 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 6 |
| 46 | 104.61 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 89 | 104.92 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 235 | 105.24 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 301 | 105.39 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 346 | 105.87 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 347 | 105.92 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 351 | 106.01 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 363 | 106.22 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 366 | 106.25 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 369 | 106.43 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 371 | 106.48 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 404 | 106.90 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 407 | 107.07 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 409 | 107.15 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 410 | 107.15 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 412 | 107.17 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 414 | 107.24 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 416 | 107.28 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 419 | 107.40 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 421 | 107.44 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 425 | 107.45 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 427 | 107.48 | humidity | 50.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 429 | 107.48 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 431 | 107.49 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 434 | 107.53 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 437 | 107.63 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 455 | 107.83 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 456 | 107.84 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 461 | 107.87 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 463 | 107.87 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 23 | 11 |
| 511 | 108.02 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 513 | 108.03 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 514 | 108.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 515 | 108.04 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 535 | 108.11 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 2 | 12 |
| 540 | 108.13 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 543 | 108.14 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 549 | 108.15 | humidity | 50.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 576 | 108.35 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 632 | 108.88 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 636 | 108.91 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 660 | 109.12 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 9 | 6 |
| 676 | 109.20 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 684 | 109.22 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 687 | 109.22 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 6 | 7 |
| 692 | 109.23 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 710 | 109.26 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 743 | 109.35 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 759 | 109.43 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 4 | 11 |
| 769 | 109.48 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 775 | 109.48 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 780 | 109.49 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 818 | 109.55 | temperature | 15.0 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 821 | 109.56 | wind | 9.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 893 | 109.70 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 894 | 109.70 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 22 | 20 |
| 907 | 109.73 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 3 | NA |
| 936 | 109.77 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 937 | 109.77 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 4 | 22 |
| 955 | 109.80 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 966 | 109.81 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 1 | 14 |
| 967 | 109.81 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 974 | 109.82 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 987 | 109.83 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 998 | 109.84 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 2 | 12 |