BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0797000 Os03g0797000|AK073440
(279 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0797000 Similar to Indole synthase 512 e-145
Os07g0182100 Similar to Tryptophan synthase alpha chain 407 e-114
Os03g0797400 Similar to Indole-3-glycerol phosphate lyase 350 6e-97
Os03g0797550 Similar to Indole-3-glycerol phosphate lyase (... 345 3e-95
AK102456 106 2e-23
>Os03g0797000 Similar to Indole synthase
Length = 279
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/279 (92%), Positives = 257/279 (92%)
Query: 1 MEMEDSXXXXXXXXXXXXXETFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSD 60
MEMEDS ETFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSD
Sbjct: 1 MEMEDSGRGVVGAGKRGVAETFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSD 60
Query: 61 VIELGVPYSDPLADGPVIQAAATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPIL 120
VIELGVPYSDPLADGPVIQAAATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPIL
Sbjct: 61 VIELGVPYSDPLADGPVIQAAATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPIL 120
Query: 121 KRGVSNFMAIIKQAGVHGLVVPDLPLEETALLRNEAVMHGIELVXXXXXXXXXERMKEIA 180
KRGVSNFMAIIKQAGVHGLVVPDLPLEETALLRNEAVMHGIELV ERMKEIA
Sbjct: 121 KRGVSNFMAIIKQAGVHGLVVPDLPLEETALLRNEAVMHGIELVLLTTPTTPTERMKEIA 180
Query: 181 KASEGFIYLVSSVGVTGARSNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWG 240
KASEGFIYLVSSVGVTGARSNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWG
Sbjct: 181 KASEGFIYLVSSVGVTGARSNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWG 240
Query: 241 ADGVIIGSAIVRQLGEAASPEEGLKRVEEYAKNMKAAMP 279
ADGVIIGSAIVRQLGEAASPEEGLKRVEEYAKNMKAAMP
Sbjct: 241 ADGVIIGSAIVRQLGEAASPEEGLKRVEEYAKNMKAAMP 279
>Os07g0182100 Similar to Tryptophan synthase alpha chain
Length = 329
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/259 (76%), Positives = 234/259 (90%)
Query: 21 TFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSDVIELGVPYSDPLADGPVIQA 80
TF++L+EQGKTAFIPFITA DPDLATT+KALKILD+CGSD+IELGVPYSDPLADGPVIQA
Sbjct: 71 TFAKLKEQGKTAFIPFITAGDPDLATTAKALKILDACGSDLIELGVPYSDPLADGPVIQA 130
Query: 81 AATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPILKRGVSNFMAIIKQAGVHGLV 140
+ATRAL KG TF+ VI+M+K VIPELSCP+ +FTYYNPILKRG++NFM ++K+AGVHGLV
Sbjct: 131 SATRALSKGTTFEDVISMVKEVIPELSCPVALFTYYNPILKRGIANFMTVVKEAGVHGLV 190
Query: 141 VPDLPLEETALLRNEAVMHGIELVXXXXXXXXXERMKEIAKASEGFIYLVSSVGVTGARS 200
VPD+PLEET +LR+EA + +ELV ERM++I KASEGFIYLVS+VGVTGAR+
Sbjct: 191 VPDVPLEETNILRSEAAKNNLELVLLTTPTTPTERMEKITKASEGFIYLVSTVGVTGARA 250
Query: 201 NVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAIVRQLGEAASP 260
NV+ +V+ LLQ+IK+VTDK VAVGFGISTPEHVKQIAGWGADGVIIGSA+VRQLGEAASP
Sbjct: 251 NVSGKVQSLLQDIKQVTDKAVAVGFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASP 310
Query: 261 EEGLKRVEEYAKNMKAAMP 279
EEGLK++EE AK++KAA+P
Sbjct: 311 EEGLKKLEELAKSLKAALP 329
>Os03g0797400 Similar to Indole-3-glycerol phosphate lyase
Length = 324
Score = 350 bits (899), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 164/260 (63%), Positives = 208/260 (80%)
Query: 20 ETFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSDVIELGVPYSDPLADGPVIQ 79
T SRL E+GKTAFIP+ITA DPD+ TT++AL++LD+CG+DVIELGVP+SDP DGPVIQ
Sbjct: 65 RTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPYNDGPVIQ 124
Query: 80 AAATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPILKRGVSNFMAIIKQAGVHGL 139
A+A RAL GAT D +++ML V PELSCP+V+F+Y PI++RG +NF A K+AGV GL
Sbjct: 125 ASAARALSAGATMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAKEAGVQGL 184
Query: 140 VVPDLPLEETALLRNEAVMHGIELVXXXXXXXXXERMKEIAKASEGFIYLVSSVGVTGAR 199
+VPDLP E R+E + + +ELV +RMK I AS GF+YLVS GVTG+R
Sbjct: 185 IVPDLPYLEACSFRSEVIKNNLELVLLTTPTTPPDRMKAITAASGGFVYLVSVNGVTGSR 244
Query: 200 SNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAIVRQLGEAAS 259
+VN RVE+LLQEIK+VTDK V VG+GISTP+HV+QIA WGADGVIIGSA+VRQLGEAAS
Sbjct: 245 QDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVRQLGEAAS 304
Query: 260 PEEGLKRVEEYAKNMKAAMP 279
P++GLKR+E+YA+++K A+P
Sbjct: 305 PKQGLKRLEKYARSLKNALP 324
>Os03g0797550 Similar to Indole-3-glycerol phosphate lyase (Fragment)
Length = 323
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 168/260 (64%), Positives = 211/260 (81%)
Query: 20 ETFSRLREQGKTAFIPFITASDPDLATTSKALKILDSCGSDVIELGVPYSDPLADGPVIQ 79
T SRLRE+GK AFIP+ITA DPD+ TT++AL++LD+CG+DVIELGVP+SDP DGPVIQ
Sbjct: 64 RTMSRLREKGKAAFIPYITAGDPDMGTTAEALRVLDACGADVIELGVPFSDPYTDGPVIQ 123
Query: 80 AAATRALKKGATFDSVIAMLKGVIPELSCPIVIFTYYNPILKRGVSNFMAIIKQAGVHGL 139
A+A RAL GAT D V++ML V PELSCP+V+F+Y+ PI++RG +NF A K+AGV GL
Sbjct: 124 ASAARALAAGATMDGVMSMLAEVTPELSCPVVLFSYFGPIVRRGPANFTAAAKEAGVQGL 183
Query: 140 VVPDLPLEETALLRNEAVMHGIELVXXXXXXXXXERMKEIAKASEGFIYLVSSVGVTGAR 199
+VPDLP ET+ R+EA+ + +ELV +RMK I AS GF+YLVS GVTG+
Sbjct: 184 IVPDLPYVETSTFRSEAIKNNLELVLLTTPATPADRMKAITAASGGFVYLVSVNGVTGSI 243
Query: 200 SNVNLRVEYLLQEIKKVTDKPVAVGFGISTPEHVKQIAGWGADGVIIGSAIVRQLGEAAS 259
NVN RVE+LLQEIK+VTDK V VGFGISTP+HV+QIA WGADGVIIGSA+VRQLGEAAS
Sbjct: 244 QNVNPRVEHLLQEIKQVTDKAVCVGFGISTPDHVRQIADWGADGVIIGSAMVRQLGEAAS 303
Query: 260 PEEGLKRVEEYAKNMKAAMP 279
P++GLKR+E+YA+++K A+P
Sbjct: 304 PKQGLKRLEKYARSLKDALP 323
>AK102456
Length = 778
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/57 (85%), Positives = 55/57 (96%)
Query: 223 VGFGISTPEHVKQIAGWGADGVIIGSAIVRQLGEAASPEEGLKRVEEYAKNMKAAMP 279
GFGISTPEHVKQIAGWGADGVIIGSA+VRQLGEAASPEEGLK++EE AK++KAA+P
Sbjct: 722 CGFGISTPEHVKQIAGWGADGVIIGSAMVRQLGEAASPEEGLKKLEELAKSLKAALP 778
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,600,896
Number of extensions: 279391
Number of successful extensions: 669
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 5
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)