BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0797400 Os03g0797400|AK072595
         (324 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02610.1  | chr4:1147662-1149217 FORWARD LENGTH=276            303   6e-83
AT3G54640.1  | chr3:20223331-20225303 REVERSE LENGTH=313          295   2e-80

>AT4G02610.1 | chr4:1147662-1149217 FORWARD LENGTH=276
          Length = 275

 Score =  303 bits (777), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 145/270 (53%), Positives = 188/270 (69%), Gaps = 3/270 (1%)

Query: 54  PATERGLSSVSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPF 113
           P++  GLS    T +RL  +GK A IPYITAGDPD+ TTA+AL++LD+CG+D+IELGVP+
Sbjct: 7   PSSTVGLS---ETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPY 63

Query: 114 SDPYNDGPVIQXXXXXXXXXXXTMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFT 173
           SDP  DGP IQ             + I+SML EV P+LSCP+ LF+Y  PI+RRG  N+ 
Sbjct: 64  SDPLADGPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYM 123

Query: 174 AAAKEAGVQGLIVPDLPYLEACSFRSEVIKNNXXXXXXXXXXXXXDRMKAITAASGGFVY 233
              K AGV GL+VPD+P  E  + R+E  K+              +RM AI  AS GF+Y
Sbjct: 124 TVIKNAGVHGLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIY 183

Query: 234 LVSVNGVTGSRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGS 293
           LVS  GVTG+R+ VN +V+ LLQ+IK+ T K V VG+GIS P+HV+Q+AEWGADGVI+GS
Sbjct: 184 LVSSVGVTGTRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGS 243

Query: 294 AMVRQLGEAASPKQGLKRLEKYARSLKNAL 323
           AMV+ LGE+ SP+QGLK LE + +SLK+AL
Sbjct: 244 AMVKILGESESPEQGLKELEFFTKSLKSAL 273



>AT3G54640.1 | chr3:20223331-20225303 REVERSE LENGTH=313
          Length = 312

 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 139/261 (53%), Positives = 185/261 (70%)

Query: 63  VSRTMSRLMEKGKTAFIPYITAGDPDMGTTAEALRLLDACGADVIELGVPFSDPYNDGPV 122
           ++ T ++L ++GK AFIPYITAGDPD+ TTAEAL++LDACG+D+IELGVP+SDP  DGPV
Sbjct: 51  LADTFTQLKKQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADGPV 110

Query: 123 IQXXXXXXXXXXXTMDGIMSMLAEVTPELSCPVVLFSYLGPIVRRGPANFTAAAKEAGVQ 182
           IQ            +D I+ ML +V P++SCP+ LF+Y  PI++RG   F ++ +  GVQ
Sbjct: 111 IQAAATRSLERGTNLDSILEMLDKVVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQ 170

Query: 183 GLIVPDLPYLEACSFRSEVIKNNXXXXXXXXXXXXXDRMKAITAASGGFVYLVSVNGVTG 242
           GL+VPD+P  E    R E + N+             +RMK I  AS GF+YLVS  GVTG
Sbjct: 171 GLVVPDVPLEETEMLRKEALNNDIELVLLTTPTTPTERMKLIVDASEGFIYLVSSIGVTG 230

Query: 243 SRQDVNPRVEHLLQEIKQVTDKAVCVGYGISTPDHVRQIAEWGADGVIIGSAMVRQLGEA 302
           +R  V+ +V+ LL++IK+ TDK V VG+GIS P+HV+QIA WGADGVI+GSAMV+ LG+A
Sbjct: 231 ARSSVSGKVQSLLKDIKEATDKPVAVGFGISKPEHVKQIAGWGADGVIVGSAMVKLLGDA 290

Query: 303 ASPKQGLKRLEKYARSLKNAL 323
            SP +GLK LEK  +SLK+AL
Sbjct: 291 KSPTEGLKELEKLTKSLKSAL 311



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,450,282
Number of extensions: 191687
Number of successful extensions: 426
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 2
Length of query: 324
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,392,385
Effective search space: 1888286625
Effective search space used: 1888286625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)