BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0176900 Os07g0176900|AK060861
         (280 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0176900  Similar to Ribose-5-phosphate isomerase precur...   488   e-138
Os04g0306400  Ribose 5-phosphate isomerase family protein         215   2e-56
Os03g0781400  Ribose 5-phosphate isomerase family protein          97   1e-20

>Os07g0176900 Similar to Ribose-5-phosphate isomerase precursor (EC 5.3.1.6)
          Length = 280

 Score =  488 bits (1256), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/280 (88%), Positives = 249/280 (88%)

Query: 1   MAAATVSVRFHPXXXXXXXXXXXXXXXXXXXVIRXXXXXXXXXXXXLTQDDLKRLAAVRA 60
           MAAATVSVRFHP                   VIR            LTQDDLKRLAAVRA
Sbjct: 1   MAAATVSVRFHPAASAARCGGGSRRSRRLSGVIRAQSAPASAAAAALTQDDLKRLAAVRA 60

Query: 61  VEQVESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTL 120
           VEQVESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTL
Sbjct: 61  VEQVESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTL 120

Query: 121 DDHPRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIVVVDETKLVTGLGGSG 180
           DDHPRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIVVVDETKLVTGLGGSG
Sbjct: 121 DDHPRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIVVVDETKLVTGLGGSG 180

Query: 181 LAMPVEVVQFCWKYNQVRLQDLFNDEGCEAKLRLDEGGKPYVTDNSNYIVDLYFKTPIKD 240
           LAMPVEVVQFCWKYNQVRLQDLFNDEGCEAKLRLDEGGKPYVTDNSNYIVDLYFKTPIKD
Sbjct: 181 LAMPVEVVQFCWKYNQVRLQDLFNDEGCEAKLRLDEGGKPYVTDNSNYIVDLYFKTPIKD 240

Query: 241 ALAAGKEISALEGVVEHGLFLDMATSVIIAGTDGVSVKTK 280
           ALAAGKEISALEGVVEHGLFLDMATSVIIAGTDGVSVKTK
Sbjct: 241 ALAAGKEISALEGVVEHGLFLDMATSVIIAGTDGVSVKTK 280



>Os04g0306400 Ribose 5-phosphate isomerase family protein
          Length = 275

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 167/239 (69%), Gaps = 15/239 (6%)

Query: 47  LTQDDLKRLAAVRAVEQVESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRT 106
           +TQ++LKR+AA RAVE VE GM LGLGTGSTAA A+  +G LL SG+L+ + GVPTS +T
Sbjct: 32  VTQEELKRVAAHRAVEMVEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKT 91

Query: 107 FEQAQSLGIPLSTLDDHPRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIVV 166
              A  +GIP+  L +   IDL+IDGADEVDP+LNLVKGRGG+LLREKM+E +  +F+V+
Sbjct: 92  EAHAARVGIPMLPLGEAGGIDLSIDGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVI 151

Query: 167 VDETKLVTGLGGSGLAMPVEVVQFCWKYNQVRLQDLFND-EGCEAKLRL----DEGGKP- 220
           VDE+KLV  LG +G A+PVEVV F   +    ++ +F+   G  A+LR     D  GK  
Sbjct: 152 VDESKLVPRLGCTG-AVPVEVVPFGCDHTLGLVRKVFDGLPGFSARLRTVASKDGEGKEE 210

Query: 221 -YVTDNSNYIVDLYFKTPIKDALAAGKEIS----ALEGVVEHGLFLDMATSVIIAGTDG 274
            +VTDN NYIV+++F+  I+  L    EIS     + GVVEHG+FL MATSV++A  DG
Sbjct: 211 MFVTDNGNYIVEMFFEDGIRGDL---NEISDRLLRITGVVEHGMFLGMATSVVVAKKDG 266



>Os03g0781400 Ribose 5-phosphate isomerase family protein
          Length = 299

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 16/220 (7%)

Query: 64  VESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKRTFEQAQSLGIPLSTLDDH 123
           VESGMV+GLG+G  +  A+  +G  L  G L+GI+G+P+S  +  +A   GI +S+ ++ 
Sbjct: 67  VESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAGIQVSSYEEG 126

Query: 124 PRIDLAIDGADEVDPD-LNLVKGRGG------ALLREKMVEAASDKFIVVVDETKLVTGL 176
            +ID A   AD ++ D +  V GR        + + EK +  ++DK   ++   K V G+
Sbjct: 127 TQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFIIGHEKYVKGI 186

Query: 177 GGSGLAMPVEVVQFCWKYNQVRLQDLF-NDEGCEAKLRLDEGGK-----PYVTDNSNYIV 230
            GS   +PV V    W      + DLF  D     +  +   G      P VT   ++++
Sbjct: 187 EGS---IPVLVKSANWIDTAEEIDDLFLGDAEVWRRPSIGTAGPLGGDFPLVTKEGHHVL 243

Query: 231 DLYFKTPIKDALAAGKEISALEGVVEHGLFLDMATSVIIA 270
           D+ F TPI D     + +  + GVV+HG+   + + V++A
Sbjct: 244 DVIFTTPIPDLGKVAESLEKIAGVVDHGIVSSIPSYVVVA 283



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,032,129
Number of extensions: 338100
Number of successful extensions: 772
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 3
Length of query: 280
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 180
Effective length of database: 11,814,401
Effective search space: 2126592180
Effective search space used: 2126592180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)