Os03g0781400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribose 5-phosphate isomerase family protein.
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Os03g0781400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribose 5-phosphate isomerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.2 | 0.451 | 10.8 | -2.5 | 0.215 | -0.828 | 0.383 | -0.169 | -0.948 | 7.02 | 90.01 | 780 | -- | -- |
| 92.24 | 0.447 | 10.8 | -2.51 | 0.209 | -0.816 | 0.312 | -- | -0.95 | 6.88 | 90.12 | 785 | -- | -- |
| 92.48 | 0.448 | 10.8 | -2.52 | 0.202 | -0.799 | -- | 0.0354 | -0.948 | 6.78 | 90.26 | 785 | -- | -- |
| 92.48 | 0.448 | 10.8 | -2.51 | 0.203 | -0.805 | -- | -- | -0.948 | 6.83 | 90.21 | 786 | -- | -- |
| 93.63 | 0.451 | 10.8 | -2.5 | -- | -0.738 | -- | -0.00757 | -0.94 | -- | 89.61 | 942 | -- | -- |
| 102.77 | 0.475 | 10.8 | -2.59 | 0.148 | -- | 0.04 | -- | -0.809 | 1 | -- | -- | -- | -- |
| 102.78 | 0.475 | 10.8 | -2.59 | 0.148 | -- | -- | -- | -0.809 | 0.974 | -- | -- | -- | -- |
| 93.56 | 0.45 | 10.8 | -2.5 | -- | -0.749 | -- | -- | -0.94 | -- | 90.07 | 939 | -- | -- |
| 248.67 | 0.734 | 10.8 | -- | 0.0704 | -1.45 | -- | -- | -0.897 | 4.81 | 86 | 2437 | -- | -- |
| 104.14 | 0.477 | 10.8 | -2.58 | -- | -- | -- | -- | -0.806 | -- | -- | -- | -- | -- |
| 279.33 | 0.782 | 10.7 | -- | 0.109 | -- | -- | -- | -0.521 | 24 | -- | -- | -- | -- |
| 243.04 | 0.726 | 10.8 | -- | -- | -1.51 | -- | -- | -0.959 | -- | 86.34 | 6711 | -- | -- |
| 280.08 | 0.781 | 10.7 | -- | -- | -- | -- | -- | -0.519 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.97 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 4 | 91.31 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 9 | 91.56 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 11 | 91.64 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 15 | 91.84 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 22 | 91.93 | radiation | 1.0 | 720 | < th | dose dependent | sin | 3 | NA |
| 30 | 92.06 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 32 | 92.15 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 33 | 92.16 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 34 | 92.16 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 10 |
| 47 | 92.18 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 75 | 92.22 | humidity | 90.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 101 | 92.26 | precipitation | 0.1 | 720 | < th | dose independent | sin | 8 | NA |
| 102 | 92.26 | precipitation | 0.1 | 720 | < th | dose dependent | sin | 8 | NA |
| 120 | 92.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 18 |
| 128 | 92.33 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 144 | 92.37 | precipitation | 0.1 | 720 | > th | dose independent | sin | 8 | NA |
| 148 | 92.37 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 181 | 92.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 201 | 92.48 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 213 | 92.52 | humidity | 90.0 | 720 | > th | dose dependent | no | NA | NA |
| 235 | 92.55 | radiation | 1.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 247 | 92.59 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 277 | 92.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 291 | 92.70 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 318 | 92.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 319 | 92.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 321 | 92.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 323 | 92.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 332 | 92.78 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 336 | 92.79 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 7 |
| 352 | 92.82 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 364 | 92.84 | precipitation | 0.1 | 720 | > th | dose dependent | sin | 8 | NA |
| 376 | 92.86 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 8 | 17 |
| 387 | 92.89 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 22 | 16 |
| 393 | 92.90 | humidity | 80.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 416 | 92.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 419 | 92.94 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 423 | 92.94 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 431 | 92.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 468 | 92.99 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 487 | 93.03 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 6 |
| 494 | 93.04 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 507 | 93.07 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 557 | 93.17 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 559 | 93.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 580 | 93.20 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 597 | 93.22 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 598 | 93.23 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 6 |
| 602 | 93.23 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 606 | 93.24 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 609 | 93.25 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 615 | 93.26 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 630 | 93.27 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 21 | 14 |
| 641 | 93.28 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 19 | 16 |
| 649 | 93.29 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 21 | 10 |
| 674 | 93.32 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 21 |
| 700 | 93.36 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 704 | 93.36 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 19 | 4 |
| 718 | 93.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 725 | 93.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 12 | 6 |
| 740 | 93.41 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 813 | 93.48 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 843 | 93.51 | humidity | 90.0 | 720 | > th | dose independent | rect. | 6 | 20 |
| 920 | 93.56 | humidity | 80.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 973 | 93.59 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 983 | 93.60 | humidity | 80.0 | 14400 | < th | dose independent | sin | 15 | NA |