BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0781400 Os03g0781400|AK071970
(299 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44520.1 | chr5:17934610-17936441 REVERSE LENGTH=297 265 1e-71
AT2G01290.1 | chr2:149192-149989 REVERSE LENGTH=266 94 1e-19
AT1G71100.1 | chr1:26814726-26815529 FORWARD LENGTH=268 89 3e-18
AT3G04790.1 | chr3:1313365-1314195 FORWARD LENGTH=277 85 5e-17
>AT5G44520.1 | chr5:17934610-17936441 REVERSE LENGTH=297
Length = 296
Score = 265 bits (678), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/222 (58%), Positives = 165/222 (74%)
Query: 62 TVDRFVESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAGIQVS 121
TVD +V+SGM++GLGSG AS AI+YLG +L GSL ++G+P S SASEA K GI +
Sbjct: 47 TVDNYVKSGMIIGLGSGEASDFAIRYLGQQLGSGSLHNVVGVPMSARSASEAAKYGIPLE 106
Query: 122 SYEEGTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFIIGHEK 181
Y +G QIDFAF DAD +EE+T+ AVIGRR++ + + +K IVK AD+ F+I E+
Sbjct: 107 YYRDGVQIDFAFHDADAVEENTLIAVIGRRRSSQEDDYILKQKSIVKVADEAVFMIKEEQ 166
Query: 182 YVKGIEGSIPVLVKSANWIDTAEEIDDLFLGDAEVWRRPSIGTAGPLGGDFPLVTKEGHH 241
Y G+EGSIPVLV+S NW+ AEEIDDL+LGDAEVWRR S+ GPLGGDFP+VT +GH+
Sbjct: 167 YKAGLEGSIPVLVQSLNWLAIAEEIDDLYLGDAEVWRRASVENEGPLGGDFPIVTSDGHN 226
Query: 242 VLDVIFTTPIPDLGKVAESLEKIAGVVDHGIVSSIPSYVVVA 283
+LDVIFTTPI L +A SL+KI GVVDHG++ VV+A
Sbjct: 227 ILDVIFTTPIRSLADLATSLDKIDGVVDHGLIIKTRCTVVIA 268
>AT2G01290.1 | chr2:149192-149989 REVERSE LENGTH=266
Length = 265
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 18/223 (8%)
Query: 65 RFVESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAGIQVSSYE 124
FVESGMV+GLG+G + A+ +G LR+G L I+GIP+S + +A+ GI +S +
Sbjct: 46 EFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDLD 105
Query: 125 EGTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFIIGHEKYVK 184
ID + AD ++ + V GR S + EK I ++ K I+ K VK
Sbjct: 106 AHPVIDLSIDGADEVDP-FLNLVKGRGG------SLLREKMIEGASKKFVVIVDDSKMVK 158
Query: 185 GIEGS---IPVLVKSANWIDTAEEIDDLFLG-DAEVWRRPSIGTAGPLGGDFPLVTKEGH 240
I GS +PV + W TAE++ L G E R +G G VT G+
Sbjct: 159 HIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLR--LGEKGK-----AFVTDNGN 211
Query: 241 HVLDVIFTTPIPDLGKVAESLEKIAGVVDHGIVSSIPSYVVVA 283
+++D+ + DLG V++++ ++ GVV+HG+ + S V++A
Sbjct: 212 YIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIA 254
>AT1G71100.1 | chr1:26814726-26815529 FORWARD LENGTH=268
Length = 267
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 13/222 (5%)
Query: 66 FVESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAGIQVSSYEE 125
FVESGMV+GLG+G + A+ + LR G L I+GIP+ST + +AV GI +S +
Sbjct: 43 FVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGIPTSTTTHEQAVSLGIPLSDLDS 102
Query: 126 GTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFIIGHEKYVKG 185
+D + AD ++ + V GR S + EK I ++ K I+ K VK
Sbjct: 103 HPVVDLSIDGADEVDP-ALNLVKGRGG------SLLREKMIEGASKKFVVIVDESKLVKY 155
Query: 186 IEGS---IPVLVKSANWIDTAEEIDDLFLGDAEVWR-RPSIGTAGPLGGDFPLVTKEGHH 241
I GS +PV V T ++++LF V + R IG+ G P VT ++
Sbjct: 156 IGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNGEEAA--PAVTDNRNY 213
Query: 242 VLDVIFTTPIPDLGKVAESLEKIAGVVDHGIVSSIPSYVVVA 283
V+D+ I DL +E++ + GVV+HG+ + + ++VA
Sbjct: 214 VVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVA 255
>AT3G04790.1 | chr3:1313365-1314195 FORWARD LENGTH=277
Length = 276
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 113/241 (46%), Gaps = 25/241 (10%)
Query: 60 KLTVDRFVES---GMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKA 116
KL ++ VE+ GMV+GLG+G + A+ +G L G L I+GIP+S + +A
Sbjct: 50 KLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQARSL 109
Query: 117 GIQVSSYEEGTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFI 176
GI + + +ID A AD ++ + + V GR + + EK + ADK +
Sbjct: 110 GIPLVGLDTHPRIDLAIDGADEVDPN-LDLVKGRGG------ALLREKMVEAVADKFIVV 162
Query: 177 IGHEKYVKGIEGS---IPVLVKSANWIDTAEEIDDLFLGDAEVWRRPSIGTAGPL---GG 230
K V G+ GS +PV V W + DLF G L G
Sbjct: 163 ADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLF---------KEFGCESKLRVDGD 213
Query: 231 DFPLVTKEGHHVLDVIFTTPIPDLGKVAESLEKIAGVVDHGIVSSIPSYVVVALNGEVQV 290
P VT ++++D+ F TP+ D A+ + K GVV+HG+ + + V++A V+V
Sbjct: 214 GKPYVTDNSNYIIDLYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEV 273
Query: 291 L 291
+
Sbjct: 274 M 274
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.137 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,404,134
Number of extensions: 218283
Number of successful extensions: 532
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 4
Length of query: 299
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 201
Effective length of database: 8,419,801
Effective search space: 1692380001
Effective search space used: 1692380001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)