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Os07g0176900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribose-5-phosphate isomerase precursor (EC 5.3.1.6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.0218) R2 : 0.604
β1 : -1.48 (0.0799) R2dD : 0.307 R2D : 0.146
β2 : 0.802 (0.0565) R2dC : 0.176 R2C : 0.093
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.757 (0.0466) R2dN8 : 0.307 R2N8 : 0.126
σ : 0.41
deviance : 76.71
__
_____
C
peak time of C : 7.08
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.15 0.361 14 -1.26 0.805 0.606 1.52 2.65 -0.806 7.15 0.2171 4481 -- --
58.82 0.357 13.9 -1.22 0.83 0.828 1.42 -- -0.783 7.11 1.337 2260 -- --
65.1 0.376 14 -1.23 0.805 0.599 -- 2.53 -0.812 7.04 0.2907 4685 -- --
63.63 0.372 14 -1.21 0.801 0.958 -- -- -0.819 6.97 0.6321 2243 -- --
95.64 0.455 14 -1.27 -- 0.537 -- 2.2 -0.809 -- 1.53 1741 -- --
71.2 0.396 13.9 -1.5 0.797 -- 1.44 -- -0.753 7.22 -- -- -- --
76.71 0.41 13.9 -1.48 0.802 -- -- -- -0.757 7.08 -- -- -- --
95.19 0.454 14 -1.17 -- 1.15 -- -- -0.799 -- 0.5569 1741 -- --
95.38 0.455 13.9 -- 0.786 1.56 -- -- -0.757 6.73 0.5215 2221 -- --
110.58 0.491 14 -1.46 -- -- -- -- -0.742 -- -- -- -- --
134.08 0.542 13.9 -- 0.786 -- -- -- -0.593 7.2 -- -- -- --
126.32 0.523 14 -- -- 1.61 -- -- -0.706 -- 0.5 1964 -- --
166.79 0.603 13.9 -- -- -- -- -- -0.58 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.29 precipitation 0.1 43200 > th dose dependent rect. 17 3
6 55.99 precipitation 0.1 43200 > th dose independent rect. 16 2
7 56.05 precipitation 0.1 43200 < th dose independent rect. 16 2
8 56.05 precipitation 0.1 43200 < th dose dependent rect. 16 2
12 56.34 precipitation 0.1 43200 > th dose dependent rect. 19 2
21 57.21 humidity 80.0 14400 > th dose independent rect. 17 1
31 57.55 humidity 80.0 14400 < th dose independent rect. 17 1
33 57.65 humidity 80.0 14400 > th dose independent rect. 14 5
39 57.81 humidity 80.0 43200 > th dose independent rect. 6 1
41 57.82 precipitation 0.1 4320 > th dose dependent rect. 13 4
42 57.83 humidity 80.0 1440 < th dose independent rect. 9 11
45 57.89 precipitation 0.1 14400 > th dose independent rect. 13 10
46 57.89 humidity 80.0 1440 > th dose independent rect. 9 11
47 57.89 temperature 30.0 270 < th dose independent rect. 13 17
48 57.89 wind 1.0 43200 > th dose dependent rect. 7 1
53 57.93 precipitation 0.1 14400 < th dose independent rect. 13 10
55 57.93 precipitation 0.1 14400 < th dose dependent rect. 13 10
61 57.97 humidity 80.0 14400 < th dose independent rect. 14 5
64 57.98 precipitation 0.1 4320 > th dose dependent rect. 13 1
65 58.00 wind 9.0 43200 < th dose dependent rect. 7 1
73 58.02 humidity 90.0 14400 < th dose dependent rect. 16 3
84 58.09 precipitation 0.1 43200 > th dose independent rect. 19 2
92 58.11 precipitation 0.1 14400 > th dose independent rect. 13 5
99 58.13 precipitation 0.1 14400 < th dose independent rect. 13 5
101 58.13 precipitation 0.1 14400 < th dose dependent rect. 13 5
120 58.20 humidity 80.0 1440 < th dose independent rect. 10 4
124 58.21 humidity 80.0 43200 < th dose independent rect. 6 1
125 58.22 wind 9.0 43200 > th dose independent rect. 20 2
128 58.22 humidity 70.0 14400 > th dose dependent rect. 18 1
130 58.23 precipitation 0.1 43200 < th dose independent rect. 19 2
132 58.23 precipitation 0.1 43200 < th dose dependent rect. 19 2
133 58.23 humidity 50.0 14400 > th dose dependent rect. 16 3
140 58.25 humidity 70.0 1440 > th dose independent rect. 12 7
160 58.28 wind 9.0 43200 > th dose dependent rect. 20 2
162 58.29 wind 1.0 43200 < th dose independent rect. 1 2
164 58.29 temperature 30.0 270 < th dose independent rect. 12 7
173 58.32 wind 9.0 43200 < th dose independent rect. 20 1
190 58.35 wind 3.0 43200 > th dose independent rect. 7 1
193 58.36 humidity 80.0 1440 < th dose independent rect. 11 1
196 58.37 wind 3.0 43200 < th dose independent rect. 7 1
200 58.37 humidity 70.0 1440 > th dose dependent rect. 9 11
212 58.40 wind 1.0 14400 < th dose dependent rect. 10 1
215 58.41 precipitation 0.1 14400 > th dose independent rect. 16 7
232 58.44 precipitation 0.1 14400 < th dose independent rect. 16 7
237 58.44 precipitation 0.1 14400 < th dose dependent rect. 16 7
246 58.46 precipitation 0.1 14400 > th dose independent sin 19 NA
247 58.46 precipitation 0.1 14400 < th dose independent sin 19 NA
248 58.46 precipitation 0.1 4320 < th dose independent rect. 13 1
252 58.46 precipitation 0.1 14400 < th dose dependent sin 19 NA
253 58.46 precipitation 0.1 4320 < th dose dependent rect. 13 1
279 58.50 precipitation 0.1 4320 > th dose independent rect. 13 1
302 58.52 humidity 70.0 14400 > th dose independent rect. 16 14
345 58.56 humidity 80.0 1440 > th dose independent rect. 9 6
389 58.60 wind 1.0 14400 < th dose independent rect. 10 1
400 58.60 precipitation 0.1 14400 > th dose dependent rect. 13 11
437 58.64 humidity 70.0 1440 > th dose independent rect. 12 18
452 58.66 humidity 80.0 1440 > th dose independent sin 22 NA
509 58.70 humidity 80.0 43200 < th dose independent rect. 5 3
534 58.72 temperature 30.0 14400 > th dose independent rect. 14 1
557 58.74 wind 1.0 14400 > th dose independent rect. 10 1
594 58.76 humidity 80.0 1440 > th dose independent rect. 11 1
606 58.77 wind 9.0 43200 < th dose independent rect. 20 7
612 58.77 precipitation 0.1 14400 > th dose dependent sin 21 NA
620 58.77 humidity 90.0 720 > th dose dependent rect. 7 18
621 58.78 humidity 80.0 1440 < th dose independent sin 23 NA
622 58.78 wind 1.0 43200 > th dose independent rect. 1 1
632 58.78 wind 1.0 43200 > th dose dependent rect. 5 4
644 58.79 wind 7.0 43200 < th dose dependent rect. 5 4
654 58.80 temperature 30.0 14400 < th dose independent rect. 14 1
665 58.80 humidity 70.0 1440 > th dose dependent sin 22 NA
762 58.85 humidity 70.0 1440 > th dose dependent rect. 10 4
774 58.86 temperature 30.0 14400 < th dose independent rect. 14 3
775 58.86 wind 1.0 43200 < th dose independent rect. 24 4
792 58.87 humidity 70.0 1440 < th dose independent rect. 12 6
797 58.87 radiation 10.0 43200 < th dose dependent rect. 22 6
824 58.90 wind 9.0 43200 < th dose independent rect. 20 5
954 58.97 humidity 70.0 1440 < th dose independent rect. 16 1