Os04g0306400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribose 5-phosphate isomerase family protein.
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Os04g0306400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribose 5-phosphate isomerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.63 | 0.49 | 13.6 | 0.706 | 1.98 | -1.53 | -0.605 | 4.85 | -0.0268 | 0.598 | 25.86 | 1371 | -- | -- |
| 117.39 | 0.505 | 13.8 | -0.429 | 2.05 | -1.04 | -0.00243 | -- | -0.381 | 0.557 | 26.3 | 1288 | -- | -- |
| 110.12 | 0.489 | 13.6 | 0.748 | 1.98 | -1.54 | -- | 5 | -0.0484 | 0.584 | 26.15 | 1378 | -- | -- |
| 116.24 | 0.502 | 13.8 | -0.592 | 2.06 | -1.1 | -- | -- | -0.356 | 0.582 | 26.27 | 1233 | -- | -- |
| 207.14 | 0.674 | 13.6 | 0.12 | -- | -3.19 | -- | 2.56 | 0.192 | -- | 16.73 | 9 | -- | -- |
| 162.4 | 0.597 | 13.8 | -0.956 | 1.87 | -- | -0.663 | -- | -0.406 | 0.535 | -- | -- | -- | -- |
| 164.28 | 0.6 | 13.8 | -0.93 | 1.87 | -- | -- | -- | -0.403 | 0.519 | -- | -- | -- | -- |
| 212.8 | 0.682 | 13.7 | -0.312 | -- | -2.83 | -- | -- | 0.0754 | -- | 18.9 | 8 | -- | -- |
| 121.66 | 0.514 | 13.7 | -- | 2.02 | -1.38 | -- | -- | -0.0309 | 0.627 | 21.19 | 1304 | -- | -- |
| 382.99 | 0.914 | 13.8 | -0.865 | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
| 187.09 | 0.64 | 13.8 | -- | 1.85 | -- | -- | -- | -0.299 | 0.494 | -- | -- | -- | -- |
| 214.72 | 0.685 | 13.7 | -- | -- | -3.05 | -- | -- | 0.122 | -- | 17.7 | 6 | -- | -- |
| 402.75 | 0.937 | 13.8 | -- | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 13 | 107.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 21 | 107.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 51 | 108.20 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 141 | 109.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 149 | 109.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 165 | 109.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 182 | 109.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 190 | 109.49 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 208 | 109.69 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 209 | 109.69 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 220 | 109.75 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 328 | 111.20 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 336 | 111.30 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 366 | 111.68 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 370 | 111.70 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 371 | 111.70 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 416 | 111.91 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 446 | 112.00 | wind | 5 | 43200 | > th | dose dependent | sin | 21 | NA |
| 496 | 112.22 | wind | 7 | 43200 | < th | dose independent | sin | 23 | NA |
| 516 | 112.31 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 573 | 112.51 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 574 | 112.52 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 579 | 112.55 | wind | 7 | 43200 | > th | dose independent | sin | 23 | NA |
| 589 | 112.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 17 |
| 625 | 112.71 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 633 | 112.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 17 |
| 640 | 112.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 647 | 112.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 15 |
| 649 | 112.77 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 655 | 112.79 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 702 | 112.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 703 | 112.95 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 706 | 112.97 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 766 | 113.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 20 |
| 786 | 113.29 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 798 | 113.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 12 |
| 804 | 113.34 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 826 | 113.40 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 840 | 113.44 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 899 | 113.61 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 970 | 113.78 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 972 | 113.78 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 18 |