BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0306400 Os04g0306400|AK103443
(275 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G01290.1 | chr2:149192-149989 REVERSE LENGTH=266 246 9e-66
AT1G71100.1 | chr1:26814726-26815529 FORWARD LENGTH=268 246 9e-66
AT3G04790.1 | chr3:1313365-1314195 FORWARD LENGTH=277 220 5e-58
AT5G44520.1 | chr5:17934610-17936441 REVERSE LENGTH=297 85 5e-17
>AT2G01290.1 | chr2:149192-149989 REVERSE LENGTH=266
Length = 265
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 136/232 (58%), Positives = 172/232 (74%), Gaps = 9/232 (3%)
Query: 32 VTQEELKRVAAHRAVEMVEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKT 91
+TQ+ELKR+AA++AVE VE GM LGLGTGSTA HA+DR+G+LLR G+L + G+PTS KT
Sbjct: 31 LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90
Query: 92 EAHAARVGIPMLPLGEAGGIDLSIDGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVI 151
+ A +GIP+ L IDLSIDGADEVDP LNLVKGRGGSLLREKMIEG+ +FVVI
Sbjct: 91 QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150
Query: 152 VDESKLVPRLGCTG-AVPVEVVPFGCDHTLGLVRKVFDGLPGFSARLRTVASKDGEGKEE 210
VD+SK+V +G + A+PVE+VPF T +R + +G G A LR GE K +
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGY-GCEANLRL-----GE-KGK 203
Query: 211 MFVTDNGNYIVEMFFEDGIRGDLNEISDRLLRITGVVEHGMFLGMATSVVVA 262
FVTDNGNYIV+M E+ + GDL +SD +LR+ GVVEHGMFL MA++V++A
Sbjct: 204 AFVTDNGNYIVDMHVEEDM-GDLGAVSDAILRLPGVVEHGMFLDMASTVIIA 254
>AT1G71100.1 | chr1:26814726-26815529 FORWARD LENGTH=268
Length = 267
Score = 246 bits (628), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 137/236 (58%), Positives = 171/236 (72%), Gaps = 4/236 (1%)
Query: 32 VTQEELKRVAAHRAVEMVEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKT 91
+TQEELK++AA++AVE VE GM +GLGTGSTA HA+ R+ +LLR G+L + G+PTS T
Sbjct: 27 LTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGIPTSTTT 86
Query: 92 EAHAARVGIPMLPLGEAGGIDLSIDGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVI 151
A +GIP+ L +DLSIDGADEVDP LNLVKGRGGSLLREKMIEG+ +FVVI
Sbjct: 87 HEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGASKKFVVI 146
Query: 152 VDESKLVPRLGCTG-AVPVEVVPFGCDHTLGLVRKVFDGLPGFSARLRTVASKDGEGKEE 210
VDESKLV +G +G AVPVEVVPF CD T G + ++F G A+LR +GE +
Sbjct: 147 VDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRD-SGCVAKLRMKIGSNGE-EAA 204
Query: 211 MFVTDNGNYIVEMFFEDGIRGDLNEISDRLLRITGVVEHGMFLGMATSVVVAKKDG 266
VTDN NY+V+++ E I GDL S+ +LR GVVEHGMFLGMAT+++VA K G
Sbjct: 205 PAVTDNRNYVVDLYLERDI-GDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFG 259
>AT3G04790.1 | chr3:1313365-1314195 FORWARD LENGTH=277
Length = 276
Score = 220 bits (561), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/236 (50%), Positives = 170/236 (72%), Gaps = 9/236 (3%)
Query: 32 VTQEELKRVAAHRAVEMVEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKT 91
++Q++LK++AA +AVE ++PGM LGLGTGSTAA A+D++G LL SGEL + G+PTS +T
Sbjct: 43 LSQDDLKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRT 102
Query: 92 EAHAARVGIPMLPLGEAGGIDLSIDGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVI 151
E A +GIP++ L IDL+IDGADEVDP L+LVKGRGG+LLREKM+E +F+V+
Sbjct: 103 EEQARSLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVV 162
Query: 152 VDESKLVPRLGCTG-AVPVEVVPFGCDHTLGLVRKVFDGLPGFSARLRTVASKDGEGKEE 210
D++KLV LG +G A+PVEVV F + L ++ +F G ++LR DG+GK
Sbjct: 163 ADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEF-GCESKLRV----DGDGKP- 216
Query: 211 MFVTDNGNYIVEMFFEDGIRGDLNEISDRLLRITGVVEHGMFLGMATSVVVAKKDG 266
+VTDN NYI++++F+ ++ D + + + GVVEHG+FLGMATSV++A K+G
Sbjct: 217 -YVTDNSNYIIDLYFKTPLK-DGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNG 270
>AT5G44520.1 | chr5:17934610-17936441 REVERSE LENGTH=297
Length = 296
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 118/238 (49%), Gaps = 17/238 (7%)
Query: 37 LKRVAAHRAVEMVEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKTEAHAA 96
L R A H V+ GM +GLG+G + A+ LG L SG L V GVP S ++ + AA
Sbjct: 40 LLRAAHHTVDNYVKSGMIIGLGSGEASDFAIRYLGQQLGSGSLHNVVGVPMSARSASEAA 99
Query: 97 RVGIPMLPLGEAGGIDLSIDGADEVDPE-LNLVKGRGGS------LLREKMIEGSGGRFV 149
+ GIP+ + ID + AD V+ L V GR S +L++K I V
Sbjct: 100 KYGIPLEYYRDGVQIDFAFHDADAVEENTLIAVIGRRRSSQEDDYILKQKSIVKVADEAV 159
Query: 150 VIVDESKLVPRLGCTGAVPVEVVPFGCDHTLGLVRKVFDGLPGFSARLRTVASKDGEGK- 208
++ E + + G G++PV V L + ++ D G A + AS + EG
Sbjct: 160 FMIKEEQY--KAGLEGSIPVLVQSLNW---LAIAEEIDDLYLG-DAEVWRRASVENEGPL 213
Query: 209 --EEMFVTDNGNYIVEMFFEDGIRGDLNEISDRLLRITGVVEHGMFLGMATSVVVAKK 264
+ VT +G+ I+++ F IR L +++ L +I GVV+HG+ + +VV+A++
Sbjct: 214 GGDFPIVTSDGHNILDVIFTTPIRS-LADLATSLDKIDGVVDHGLIIKTRCTVVIAEE 270
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.139 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,375,743
Number of extensions: 234368
Number of successful extensions: 540
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 4
Length of query: 275
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 178
Effective length of database: 8,447,217
Effective search space: 1503604626
Effective search space used: 1503604626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)