BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0164700 Os07g0164700|AK069302
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0164700 Similar to Helicase-like protein [Oryza sativa... 394 e-110
Os03g0621700 Conserved hypothetical protein 185 2e-47
Os10g0388500 Conserved hypothetical protein 64 6e-11
>Os07g0164700 Similar to Helicase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 210
Score = 394 bits (1012), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/210 (91%), Positives = 192/210 (91%)
Query: 1 MKEFVGGTAPSSTTSDPLADITNTNGLGFTNRRGKGRAKSLCVVRRNDEECHGSKENCDN 60
MKEFVGGTAPSSTTSDPLADITNTNGLGFTNRRGKGRAKSLCVVRRNDEECHGSKENCDN
Sbjct: 1 MKEFVGGTAPSSTTSDPLADITNTNGLGFTNRRGKGRAKSLCVVRRNDEECHGSKENCDN 60
Query: 61 SEQNTPIASNVHPIVTPNSQSFADDRDASFSTPSNLPMCTGAHGDVTNLTHAEVARKRAR 120
SEQNTPIASNVHPIVTPNSQSFADDRDASFSTPSNLPMCTGAHGDVTNLTHAEVARKRAR
Sbjct: 61 SEQNTPIASNVHPIVTPNSQSFADDRDASFSTPSNLPMCTGAHGDVTNLTHAEVARKRAR 120
Query: 121 NWYTSLTQEQXXXXXXXXXXXXXXXXXXSQVLKSATNSGVAPLGKLSNVSAADLMTCQLE 180
NWYTSLTQEQ SQVLKSATNSGVAPLGKLSNVSAADLMTCQLE
Sbjct: 121 NWYTSLTQEQKDERNKKDHERRKRKKEESQVLKSATNSGVAPLGKLSNVSAADLMTCQLE 180
Query: 181 VNDSSTLKNEVMLPILISHPDVSHLQSSTM 210
VNDSSTLKNEVMLPILISHPDVSHLQSSTM
Sbjct: 181 VNDSSTLKNEVMLPILISHPDVSHLQSSTM 210
>Os03g0621700 Conserved hypothetical protein
Length = 137
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 94/118 (79%), Positives = 95/118 (80%), Gaps = 1/118 (0%)
Query: 71 VHPIVTPNSQSFADDRDASFSTPSNLPMCTGAHGDVTNLTHAEVARKRARNWYTSLTQEQ 130
VHPIV PNSQ FADDRDASFSTPSNLPMCTGAHGDVTNLTHAEV RKRARNWY SLTQEQ
Sbjct: 16 VHPIVMPNSQPFADDRDASFSTPSNLPMCTGAHGDVTNLTHAEVVRKRARNWYASLTQEQ 75
Query: 131 XXXXXXXXXXXXXXXXXXSQVL-KSATNSGVAPLGKLSNVSAADLMTCQLEVNDSSTL 187
SQVL KSATNSGVAPLGKLSN+SAADLMTCQLEVNDSSTL
Sbjct: 76 KDERNKKDRERRKRKEEESQVLNKSATNSGVAPLGKLSNISAADLMTCQLEVNDSSTL 133
>Os10g0388500 Conserved hypothetical protein
Length = 531
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 70 NVHPIVTPNSQSFADDRDASFSTPSNLPM---CTGAHGDVTNLTHAEVARKRARNWYTSL 126
NV IVTP F + D S+STPS M AHGDVTNL+ +E+ KR+R WY SL
Sbjct: 397 NVGSIVTPVRLPFTNSSDMSYSTPSEYTMPLQAEDAHGDVTNLSASELKNKRSREWYASL 456
Query: 127 TQEQXXXXXXXXXXXXXXXXXXSQ--VLKSATNSGVAP---LGKLSNVSAAD 173
T+EQ SQ V K+ T+ P LG +S V+A D
Sbjct: 457 TKEQKEDRNRKARDARRRRKDESQGNVPKATTSKFSTPTPTLGDISIVTAGD 508
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.124 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,403,309
Number of extensions: 240674
Number of successful extensions: 516
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 3
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)