Os07g0164700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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Os07g0164700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Helicase-like protein [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.59 | 0.422 | 8.46 | -1.42 | 0.49 | -0.615 | -0.541 | 1.69 | -0.395 | 1.39 | 19.48 | 1353 | -- | -- |
| 86.56 | 0.433 | 8.45 | -1.29 | 0.487 | -0.565 | -0.749 | -- | -0.338 | 1.16 | 18.93 | 1390 | -- | -- |
| 80.9 | 0.419 | 8.47 | -1.46 | 0.478 | -0.594 | -- | 2.1 | -0.406 | 1.73 | 19.5 | 1281 | -- | -- |
| 88.84 | 0.439 | 8.44 | -1.28 | 0.492 | -0.556 | -- | -- | -0.343 | 1.47 | 19.15 | 1368 | -- | -- |
| 93.04 | 0.449 | 8.44 | -1.38 | -- | -0.708 | -- | 1.96 | -0.361 | -- | 19.51 | 1272 | -- | -- |
| 98.64 | 0.466 | 8.42 | -1.22 | 0.57 | -- | -0.67 | -- | -0.213 | 1.15 | -- | -- | -- | -- |
| 100.46 | 0.469 | 8.41 | -1.2 | 0.573 | -- | -- | -- | -0.21 | 1.34 | -- | -- | -- | -- |
| 101.14 | 0.468 | 8.44 | -1.26 | -- | -0.716 | -- | -- | -0.361 | -- | 19.1 | 1276 | -- | -- |
| 123.57 | 0.518 | 8.42 | -- | 0.485 | -0.668 | -- | -- | -0.295 | 2.16 | 19.98 | 8470 | -- | -- |
| 120.71 | 0.513 | 8.4 | -1.18 | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
| 138.44 | 0.55 | 8.38 | -- | 0.552 | -- | -- | -- | -0.0759 | 1.26 | -- | -- | -- | -- |
| 122.06 | 0.515 | 8.41 | -- | -- | -0.938 | -- | -- | -0.29 | -- | 29.5 | 31269 | -- | -- |
| 157.31 | 0.585 | 8.37 | -- | -- | -- | -- | -- | -0.0669 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 79.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 80.56 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 3 | 80.56 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 6 | 80.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 15 | 81.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 16 | 81.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 18 | 81.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 20 | 81.31 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 21 | 81.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 12 |
| 27 | 81.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 28 | 81.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 31 | 81.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 32 | 81.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 37 | 81.32 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 103 | 81.34 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 137 | 81.36 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 150 | 81.42 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 161 | 81.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 163 | 81.51 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 174 | 81.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 190 | 81.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 193 | 81.69 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 213 | 81.78 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 273 | 82.01 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 274 | 82.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 309 | 82.05 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 323 | 82.14 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 432 | 82.27 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 445 | 82.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 455 | 82.36 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 459 | 82.39 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 468 | 82.46 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 469 | 82.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 477 | 82.53 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 478 | 82.54 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 499 | 82.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 502 | 82.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 577 | 82.78 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 21 |
| 581 | 82.79 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 624 | 82.85 | radiation | 1 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 636 | 82.86 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 642 | 82.88 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 6 |
| 660 | 82.96 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 685 | 83.02 | radiation | 1 | 1440 | > th | dose dependent | sin | 5 | NA |
| 832 | 83.11 | radiation | 40 | 1440 | < th | dose dependent | rect. | 22 | 15 |
| 835 | 83.12 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 11 |
| 980 | 83.30 | radiation | 30 | 1440 | < th | dose dependent | sin | 3 | NA |