BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0146300 Os07g0146300|Os07g0146300
(209 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0146300 179 1e-45
Os02g0561400 96 1e-20
Os02g0561000 96 1e-20
Os02g0560600 96 1e-20
Os02g0560200 96 1e-20
Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-) 96 1e-20
Os02g0679400 80 7e-16
Os02g0561900 79 2e-15
Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-... 65 3e-11
Os03g0398600 Zinc finger, RING-type domain containing protein 65 4e-11
>Os07g0146300
Length = 209
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 105/209 (50%)
Query: 1 MGAVALGSRWWPAGRPDSPPLGRGEAGSTVXXXXXXXXXXXXXXXXXXXXXWHXXXXXXX 60
MGAVALGSRWWPAGRPDSPPLGRGEAGSTV WH
Sbjct: 1 MGAVALGSRWWPAGRPDSPPLGRGEAGSTVAGPRRGGIRRRQAAARPDPPPWHGRRGRSQ 60
Query: 61 XXXXXXXXXXXXXXXVDPDVLRSLPVTVYSRSTTXXXXXXXXXXXXXXXXXXXXXXXGDE 120
VDPDVLRSLPVTVYSRSTT GDE
Sbjct: 61 RRRSGNGRDGGRGGGVDPDVLRSLPVTVYSRSTTAAAAKEEEDDGVECVVCLAELEEGDE 120
Query: 121 ARFLPRCGHGFHAECVDMWVGSHSTCPLCRXXXXXXXXXXXXXXXXXXXXMHXXXXXXXX 180
ARFLPRCGHGFHAECVDMWVGSHSTCPLCR MH
Sbjct: 121 ARFLPRCGHGFHAECVDMWVGSHSTCPLCRLTVVVLSPLLLTPVPPAPAVMHDDDVRARR 180
Query: 181 XXXXXXXXXXNTSALVDAWATGPRGASTT 209
NTSALVDAWATGPRGASTT
Sbjct: 181 RPRHSSQRESNTSALVDAWATGPRGASTT 209
>Os02g0561400
Length = 314
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 76 VDPDVLRSLPVTVYSRSTTXXXXXXXXXXX---XXXXXXXXXXXXGDEARFLPRCGHGFH 132
VDP+VLRSLPVTVYSRST G+EARFLPRCGHGFH
Sbjct: 88 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFH 147
Query: 133 AECVDMWVGSHSTCPLCR 150
AECVDMW+GSHSTCPLCR
Sbjct: 148 AECVDMWLGSHSTCPLCR 165
>Os02g0561000
Length = 314
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 76 VDPDVLRSLPVTVYSRSTTXXXXXXXXXXX---XXXXXXXXXXXXGDEARFLPRCGHGFH 132
VDP+VLRSLPVTVYSRST G+EARFLPRCGHGFH
Sbjct: 88 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFH 147
Query: 133 AECVDMWVGSHSTCPLCR 150
AECVDMW+GSHSTCPLCR
Sbjct: 148 AECVDMWLGSHSTCPLCR 165
>Os02g0560600
Length = 314
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 76 VDPDVLRSLPVTVYSRSTTXXXXXXXXXXX---XXXXXXXXXXXXGDEARFLPRCGHGFH 132
VDP+VLRSLPVTVYSRST G+EARFLPRCGHGFH
Sbjct: 88 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFH 147
Query: 133 AECVDMWVGSHSTCPLCR 150
AECVDMW+GSHSTCPLCR
Sbjct: 148 AECVDMWLGSHSTCPLCR 165
>Os02g0560200
Length = 314
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 76 VDPDVLRSLPVTVYSRSTTXXXXXXXXXXX---XXXXXXXXXXXXGDEARFLPRCGHGFH 132
VDP+VLRSLPVTVYSRST G+EARFLPRCGHGFH
Sbjct: 88 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFH 147
Query: 133 AECVDMWVGSHSTCPLCR 150
AECVDMW+GSHSTCPLCR
Sbjct: 148 AECVDMWLGSHSTCPLCR 165
>Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-)
Length = 325
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 76 VDPDVLRSLPVTVYSRSTTXXXXXXXXXXX---XXXXXXXXXXXXGDEARFLPRCGHGFH 132
VDP+VLRSLPVTVYSRST G+EARFLPRCGHGFH
Sbjct: 99 VDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFH 158
Query: 133 AECVDMWVGSHSTCPLCR 150
AECVDMW+GSHSTCPLCR
Sbjct: 159 AECVDMWLGSHSTCPLCR 176
>Os02g0679400
Length = 110
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 80 VLRSLPVTVYSRSTTXXXXXXXXXXXXXXXXX-XXXXXXGDEARFLPRCGHGFHAECVDM 138
VLRSL VTVYS S GDEARFLPRCGHGFHAECVDM
Sbjct: 20 VLRSLLVTVYSHSMAAAAAAVKEEDDSIECAVCLAELEEGDEARFLPRCGHGFHAECVDM 79
Query: 139 WVGSHSTCPLCR 150
W+GSHSTCP CR
Sbjct: 80 WLGSHSTCPRCR 91
>Os02g0561900
Length = 205
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 76 VDPDVLRSLPVTVYSRSTTXXXXXXXXXXXXXXXXXXXXXXXGDEARFLPRCGHGFHAEC 135
VDP+VL PVTVYSR+ G+EARFL RCGHGFHAEC
Sbjct: 95 VDPEVL---PVTVYSRAAAAAAAKEDGVECAVCLAKLED---GEEARFLRRCGHGFHAEC 148
Query: 136 VDMWVGSHSTCPLCR 150
VDMW+GSHSTCPLCR
Sbjct: 149 VDMWLGSHSTCPLCR 163
>Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 321
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 81 LRSLPVTVYSRSTTXXXXXXXXXXXXXXXXXXXXXXXGDEARFLPRCGHGFHAECVDMWV 140
LR+LPVTVY++ G++ R LP+C HGFH EC+DMW
Sbjct: 90 LRALPVTVYAKPAAARGEEALECAVCLSEVAD-----GEKVRMLPKCDHGFHVECIDMWF 144
Query: 141 GSHSTCPLCR 150
SH TCPLCR
Sbjct: 145 HSHDTCPLCR 154
>Os03g0398600 Zinc finger, RING-type domain containing protein
Length = 267
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 29/33 (87%)
Query: 118 GDEARFLPRCGHGFHAECVDMWVGSHSTCPLCR 150
G+ AR LPRCGHGFH ECVDMW+ S+STCPLCR
Sbjct: 101 GESARVLPRCGHGFHVECVDMWLRSNSTCPLCR 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.470
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,226,299
Number of extensions: 81019
Number of successful extensions: 615
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 605
Number of HSP's successfully gapped: 13
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)