BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0141600 Os07g0141600|AK103156
(484 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0141600 Similar to Serologically defined breast cancer... 728 0.0
Os04g0555400 Similar to Serologically defined breast cancer... 680 0.0
Os02g0730100 Pre-mRNA processing ribonucleoprotein, binding... 257 2e-68
Os03g0350100 Similar to SAR DNA-binding protein-like protein 89 8e-18
Os03g0352300 Similar to Nucleolar protein 75 9e-14
>Os07g0141600 Similar to Serologically defined breast cancer antigen NY-BR-99
Length = 484
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/484 (77%), Positives = 376/484 (77%)
Query: 1 MASLADSFLADLDELSDXXXXXXXXXXXXVXXXXXXXXXXXXXXSLNYDDLDSVSKLQKT 60
MASLADSFLADLDELSD V SLNYDDLDSVSKLQKT
Sbjct: 1 MASLADSFLADLDELSDNEAYPEEENAEAVGMDEDGGEDMLDLESLNYDDLDSVSKLQKT 60
Query: 61 QCYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDFNALSVDXXXXXXXXXXXXRDK 120
QCYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDFNALSVD RDK
Sbjct: 61 QCYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDFNALSVDIENEIIIIHNFIRDK 120
Query: 121 YRLKFPELESLVHHPIDYARVVQKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTNGKPL 180
YRLKFPELESLVHHPIDYARVVQKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTNGKPL
Sbjct: 121 YRLKFPELESLVHHPIDYARVVQKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTNGKPL 180
Query: 181 SEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLSAIVGSAVASKXXXXXXXXX 240
SEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLSAIVGSAVASK
Sbjct: 181 SEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLSAIVGSAVASKLMGTAGGLG 240
Query: 241 XXXKMPACNVQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLIAAKS 300
KMPACNVQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLIAAKS
Sbjct: 241 ALAKMPACNVQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLIAAKS 300
Query: 301 TLAARINSIRGDPTGKAGRNLLEEIRKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXX 360
TLAARINSIRGDPTGKAGRNLLEEIRKKIEKWQE DSEP
Sbjct: 301 TLAARINSIRGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDSEPKKKRGGRRL 360
Query: 361 XXXXXXYAQTDMMKLANRMQFGVPEESSXXXXXXXXXXXXXXXXSGKLRVSAAQSKLAAK 420
YAQTDMMKLANRMQFGVPEESS SGKLRVSAAQSKLAAK
Sbjct: 361 RKMKERYAQTDMMKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAK 420
Query: 421 VAKKFKEKSYXXXXXXXXXXXXXXFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSK 480
VAKKFKEKSY FTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSK
Sbjct: 421 VAKKFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSK 480
Query: 481 IKRN 484
IKRN
Sbjct: 481 IKRN 484
>Os04g0555400 Similar to Serologically defined breast cancer antigen NY-BR-99
Length = 484
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/483 (73%), Positives = 365/483 (75%)
Query: 1 MASLADSFLADLDELSDXXXXXXXXXXXXVXXXXXXXXXXXXXXSLNYDDLDSVSKLQKT 60
MASLADSFLADLDELSD V SLNYDDLDSVSKLQKT
Sbjct: 1 MASLADSFLADLDELSDNEAYPEEENAEAVGTEEIGDDDMPDLESLNYDDLDSVSKLQKT 60
Query: 61 QCYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDFNALSVDXXXXXXXXXXXXRDK 120
Q YNDIMQKVE+ALQKGTDFSNQ SILEEDPEYQLIVD NALSVD RDK
Sbjct: 61 QRYNDIMQKVENALQKGTDFSNQRSILEEDPEYQLIVDCNALSVDIENEIIIIHNFIRDK 120
Query: 121 YRLKFPELESLVHHPIDYARVVQKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTNGKPL 180
YRLKFPELESLVHHPIDYARVVQKIGNE+DLTLVDLEGLLPSAIIMV+SVTASTT+GKPL
Sbjct: 121 YRLKFPELESLVHHPIDYARVVQKIGNEMDLTLVDLEGLLPSAIIMVISVTASTTSGKPL 180
Query: 181 SEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLSAIVGSAVASKXXXXXXXXX 240
SEENL KTIEACERALTLDAAKKKVL+FVESRMG IAPNLSAIVGSAVASK
Sbjct: 181 SEENLVKTIEACERALTLDAAKKKVLEFVESRMGYIAPNLSAIVGSAVASKLMGTAGGLG 240
Query: 241 XXXKMPACNVQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLIAAKS 300
KMPACNVQLLGAK+KNLAGFS+ATSQFRVGYLEQT+VFQSTPPALRT ACRLIAAKS
Sbjct: 241 ALAKMPACNVQLLGAKRKNLAGFSTATSQFRVGYLEQTDVFQSTPPALRTRACRLIAAKS 300
Query: 301 TLAARINSIRGDPTGKAGRNLLEEIRKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXX 360
TLAARI+SIRGDPTGKAGRNLLEEIRKKIEKWQE D EP
Sbjct: 301 TLAARIDSIRGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDFEPKKKRGGRRL 360
Query: 361 XXXXXXYAQTDMMKLANRMQFGVPEESSXXXXXXXXXXXXXXXXSGKLRVSAAQSKLAAK 420
YAQTDMMKLANRMQFGVPEESS SGKLRVS A SKL+AK
Sbjct: 361 RKMKERYAQTDMMKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSTAPSKLSAK 420
Query: 421 VAKKFKEKSYXXXXXXXXXXXXXXFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSK 480
+ KKFKEKSY FTPVQGIELSNPQ+HGNLLGSGTQSTYFSETGTFSK
Sbjct: 421 ITKKFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQAHGNLLGSGTQSTYFSETGTFSK 480
Query: 481 IKR 483
IKR
Sbjct: 481 IKR 483
>Os02g0730100 Pre-mRNA processing ribonucleoprotein, binding region domain
containing protein
Length = 385
Score = 257 bits (656), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/233 (59%), Positives = 154/233 (66%)
Query: 250 VQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLIAAKSTLAARINSI 309
+QLLGAKKKNL+GFS+A SQFRVGYLEQTEVFQST P+LRT ACR+I+AKSTLAARI+SI
Sbjct: 136 MQLLGAKKKNLSGFSTAASQFRVGYLEQTEVFQSTIPSLRTHACRIISAKSTLAARIDSI 195
Query: 310 RGDPTGKAGRNLLEEIRKKIEKWQEXXXXXXXXXXXXXDSEPXXXXXXXXXXXXXXXYAQ 369
RGDPTGKAG +LLEEI KK EK QE D P YAQ
Sbjct: 196 RGDPTGKAGHSLLEEICKKTEKLQELPPAKILKPLPVPDCMPKKKRGGCRLRKMKERYAQ 255
Query: 370 TDMMKLANRMQFGVPEESSXXXXXXXXXXXXXXXXSGKLRVSAAQSKLAAKVAKKFKEKS 429
TDMMKLANRMQFGVPEESS SGKLR+ A QS+LAAKVAK+FK +S
Sbjct: 256 TDMMKLANRMQFGVPEESSLGDGLGKGYGLLGQAGSGKLRLLAGQSRLAAKVAKRFKARS 315
Query: 430 YXXXXXXXXXXXXXXFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSKIK 482
FTPVQG+ELSNP H + SGTQSTYFS+ GTFS I+
Sbjct: 316 CDRSESRSGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIR 368
>Os03g0350100 Similar to SAR DNA-binding protein-like protein
Length = 568
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 2/196 (1%)
Query: 118 RDKYRLKFPELESLVHHPIDYARVVQKIGNEIDLTLVDLEGLLPSAIIMV-VSVTASTTN 176
R+ Y FPEL +V I YA+VV+ +G+ + +D +L + + A +
Sbjct: 182 REWYGWHFPELTKIVADNIQYAKVVKMMGDRTNAESLDFSEILSDDEVEAQLKEAAVISM 241
Query: 177 GKPLSEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLSAIVGSAVASKXXXXX 236
G +SE +L E C++ L L + ++ D++ SRM IAPNL+A+VG V ++
Sbjct: 242 GTEVSELDLLNIRELCDQVLALSEYRAQLFDYLRSRMNTIAPNLTALVGELVGARLIAHG 301
Query: 237 XXXXXXXKMPACNVQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLI 296
K P +Q+LGA+K + + + G + + P + R +
Sbjct: 302 GSLVNLAKQPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSL 361
Query: 297 AAKSTLAARINSIRGD 312
AAK+ LA R +++ GD
Sbjct: 362 AAKTALAIRYDAL-GD 376
>Os03g0352300 Similar to Nucleolar protein
Length = 552
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 8/221 (3%)
Query: 118 RDKYRLKFPELESLVHHPIDYARVVQKIGNEIDLT------LVDLEGLLPSAIIMVVSVT 171
R+ + FPEL +V+ YA++ I ++ +L L DL G A +V +
Sbjct: 193 REWFGWHFPELVKIVNDNYIYAKLADYIKDKSELAEKDISKLADLIGDEDKAKEVVEAAK 252
Query: 172 ASTTNGKPLSEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLSAIVGSAVASK 231
AS G+ LSE +L + +R + L +K + +++ ++M IAPNL++++G V ++
Sbjct: 253 ASM--GQDLSEVDLMNVKQFAQRVMNLSEYRKNLYEYLVTKMNDIAPNLTSLIGEVVGAR 310
Query: 232 XXXXXXXXXXXXKMPACNVQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTS 291
K PA +Q+LGA+K + + + G + + +
Sbjct: 311 LISHAGSLSNLAKCPASTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASTKNKGR 370
Query: 292 ACRLIAAKSTLAARINSIRGDPTGKAGRNLLEEIRKKIEKW 332
R +A K ++A+RI+ T G+ L E++ ++++ +
Sbjct: 371 MARYLANKCSIASRIDCYSESATAVFGQKLREQVEERLDFY 411
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,535,222
Number of extensions: 316117
Number of successful extensions: 615
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 5
Length of query: 484
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 379
Effective length of database: 11,553,331
Effective search space: 4378712449
Effective search space used: 4378712449
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)