Os07g0141600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serologically defined breast cancer antigen NY-BR-99.
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Os07g0141600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serologically defined breast cancer antigen NY-BR-99.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.12 | 0.373 | 7.66 | 0.977 | 0.295 | -1.36 | 0.456 | -1.65 | 0.212 | 3.75 | 26.55 | 16 | -- | -- |
| 66.4 | 0.382 | 7.68 | 0.708 | 0.325 | -1.27 | -0.0971 | -- | 0.161 | 3.97 | 27.92 | 25 | -- | -- |
| 63.44 | 0.374 | 7.66 | 0.936 | 0.287 | -1.32 | -- | -1.35 | 0.207 | 4.06 | 26.55 | 16 | -- | -- |
| 66.42 | 0.382 | 7.68 | 0.708 | 0.331 | -1.27 | -- | -- | 0.163 | 3.96 | 28.09 | 16 | -- | -- |
| 66.7 | 0.382 | 7.66 | 0.966 | -- | -1.18 | -- | -1.3 | 0.25 | -- | 25.58 | 26 | -- | -- |
| 89.46 | 0.443 | 7.62 | 1.01 | 0.195 | -- | 0.11 | -- | 0.432 | 10.5 | -- | -- | -- | -- |
| 89.51 | 0.443 | 7.62 | 1.01 | 0.195 | -- | -- | -- | 0.432 | 10.4 | -- | -- | -- | -- |
| 69.63 | 0.39 | 7.68 | 0.766 | -- | -1.09 | -- | -- | 0.204 | -- | 25.88 | 20 | -- | -- |
| 78.02 | 0.411 | 7.71 | -- | 0.412 | -1.57 | -- | -- | 0.0288 | 4.31 | 27.43 | 80 | -- | -- |
| 91.84 | 0.448 | 7.63 | 1.01 | -- | -- | -- | -- | 0.432 | -- | -- | -- | -- | -- |
| 116.52 | 0.505 | 7.65 | -- | 0.19 | -- | -- | -- | 0.32 | 10 | -- | -- | -- | -- |
| 83.89 | 0.427 | 7.71 | -- | -- | -1.36 | -- | -- | 0.0722 | -- | 25.7 | 65 | -- | -- |
| 118.7 | 0.509 | 7.65 | -- | -- | -- | -- | -- | 0.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 64.07 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 2 | 64.19 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 3 | 64.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 5 | 64.54 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 6 | 64.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 7 | 64.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 9 | 64.59 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 64.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 15 | 64.87 | temperature | 25 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 20 | 64.89 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 23 | 64.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 24 | 64.90 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 29 | 64.98 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 30 | 64.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 34 | 65.01 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 37 | 65.03 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 67 | 65.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 70 | 65.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 107 | 65.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 140 | 66.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 337 | 68.06 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 347 | 68.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 363 | 68.25 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 562 | 69.73 | temperature | 10 | 90 | > th | dose dependent | sin | 9 | NA |
| 574 | 69.79 | temperature | 15 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 575 | 69.80 | temperature | 25 | 10 | < th | dose dependent | sin | 22 | NA |
| 579 | 69.82 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 696 | 70.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 15 |
| 717 | 70.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 776 | 70.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 818 | 71.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 850 | 71.28 | temperature | 25 | 720 | < th | dose dependent | sin | 21 | NA |
| 853 | 71.29 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 888 | 71.44 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 910 | 71.53 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 957 | 71.74 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 965 | 71.76 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 15 |