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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0730100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pre-mRNA processing ribonucleoprotein, binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0421) R2 : 0.628
β1 : 0.764 (0.168) R2dD : 0.0343 R2D : -0.0885
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.73 (0.232) R2dE : 0.904 R2E : 0.23
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.98 (0.631) R2dD*E : 0.362 R2D*E : -0.891
γ1 : 0.906 (0.0827) R2dN8 : 0.183 R2N8 : 0.183
σ : 0.613
deviance : 173.12
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.4
memory length : 6258
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.95 0.616 3.96 0.768 0.127 -3.73 0.364 -5.98 0.906 18.5 19.44 6277 -- --
232.89 0.711 4.17 0.482 0.212 -2.59 0.44 -- 0.863 18.8 17.9 3731 -- --
172.21 0.611 3.96 0.772 0.131 -3.72 -- -5.97 0.909 19.1 19.4 6242 -- --
195.21 0.651 4.21 0.365 0.13 -1.97 -- -- 0.71 18.7 21.08 6441 -- --
173.12 0.613 3.96 0.764 -- -3.73 -- -5.98 0.906 -- 19.4 6258 -- --
273.95 0.776 4.07 1.74 0.157 -- 0.374 -- 1.37 19.7 -- -- -- --
274.33 0.776 4.07 1.73 0.157 -- -- -- 1.37 20.2 -- -- -- --
196.14 0.652 4.21 0.351 -- -1.98 -- -- 0.699 -- 21.1 6440 -- --
197.27 0.654 4.23 -- 0.124 -2.18 -- -- 0.64 18.7 21 6437 -- --
275.69 0.776 4.06 1.72 -- -- -- -- 1.37 -- -- -- -- --
352.8 0.879 4.11 -- 0.151 -- -- -- 1.18 21 -- -- -- --
198.08 0.656 4.24 -- -- -2.18 -- -- 0.609 -- 21.08 6441 -- --
354.12 0.878 4.11 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.18 humidity 60 43200 < th dose independent rect. 23 11
8 157.05 humidity 60 43200 < th dose dependent rect. 11 1
10 157.50 humidity 60 43200 < th dose independent rect. 8 2
12 157.88 humidity 60 43200 > th dose independent rect. 24 10
15 157.96 humidity 60 43200 < th dose dependent rect. 23 13
26 158.33 humidity 60 43200 < th dose dependent rect. 9 3
32 158.54 humidity 70 43200 < th dose dependent rect. 8 1
36 158.86 humidity 60 43200 > th dose independent rect. 8 2
41 159.58 atmosphere 1015 43200 > th dose independent rect. 21 8
43 159.63 atmosphere 1015 43200 > th dose independent rect. 22 5
47 159.68 atmosphere 1015 43200 < th dose independent rect. 21 8
62 159.88 atmosphere 1015 43200 > th dose independent rect. 17 10
65 159.89 atmosphere 1015 43200 > th dose independent rect. 17 7
97 160.03 atmosphere 1015 43200 > th dose independent sin 13 NA
114 160.08 atmosphere 1015 43200 < th dose independent rect. 16 12
155 160.21 atmosphere 1015 43200 < th dose independent sin 12 NA
239 160.50 atmosphere 1015 43200 > th dose independent rect. 1 4
255 160.53 atmosphere 1015 43200 < th dose independent rect. 1 4
358 160.82 atmosphere 1015 43200 > th dose independent rect. 20 1
514 161.09 atmosphere 1015 43200 > th dose independent no NA NA
521 161.10 atmosphere 1015 43200 > th dose independent rect. 1 23
555 161.16 atmosphere 1015 43200 < th dose independent no NA NA
566 161.18 atmosphere 1015 43200 < th dose independent rect. 1 23
593 161.24 atmosphere 1015 43200 < th dose independent rect. 3 23
641 161.39 atmosphere 1015 43200 > th dose independent rect. 23 23
697 161.60 atmosphere 1015 43200 > th dose dependent rect. 21 10
737 161.73 atmosphere 1015 43200 > th dose dependent rect. 23 6
738 161.73 atmosphere 1015 43200 > th dose dependent rect. 22 8
925 162.72 atmosphere 1015 43200 > th dose dependent sin 10 NA
969 162.97 atmosphere 1015 43200 > th dose dependent rect. 1 3
991 163.08 radiation 1 43200 < th dose dependent rect. 17 1