BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0730100 Os02g0730100|Os02g0730100
(385 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0730100 Pre-mRNA processing ribonucleoprotein, binding... 753 0.0
Os07g0141600 Similar to Serologically defined breast cancer... 304 6e-83
Os04g0555400 Similar to Serologically defined breast cancer... 296 2e-80
>Os02g0730100 Pre-mRNA processing ribonucleoprotein, binding region domain
containing protein
Length = 385
Score = 753 bits (1943), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/385 (94%), Positives = 365/385 (94%)
Query: 1 MWWVLISLVWSRMADLWKLCGETVAIPLLQTYPVTVLCWWLLCPWGILVDSYIIFFSEEG 60
MWWVLISLVWSRMADLWKLCGETVAIPLLQTYPVTVLCWWLLCPWGILVDSYIIFFSEEG
Sbjct: 1 MWWVLISLVWSRMADLWKLCGETVAIPLLQTYPVTVLCWWLLCPWGILVDSYIIFFSEEG 60
Query: 61 GFCGVESCAQASLPDSFLADLDELSDNEAYPEGEDEEARNMEEDGDGGMPCCEFLNHDDL 120
GFCGVESCAQASLPDSFLADLDELSDNEAYPEGEDEEARNMEEDGDGGMPCCEFLNHDDL
Sbjct: 61 GFCGVESCAQASLPDSFLADLDELSDNEAYPEGEDEEARNMEEDGDGGMPCCEFLNHDDL 120
Query: 121 NSASELHKTQRYNDIMQLLGAKKKNLSGFSTAASQFRVGYLEQTEVFQSTIPSLRTHACR 180
NSASELHKTQRYNDIMQLLGAKKKNLSGFSTAASQFRVGYLEQTEVFQSTIPSLRTHACR
Sbjct: 121 NSASELHKTQRYNDIMQLLGAKKKNLSGFSTAASQFRVGYLEQTEVFQSTIPSLRTHACR 180
Query: 181 IISAKSTLAARIDSIRGDPTGKAGHSLLEEICKKTEKLQELPPAKILKPLPVPDCMPKKK 240
IISAKSTLAARIDSIRGDPTGKAGHSLLEEICKKTEKLQELPPAKILKPLPVPDCMPKKK
Sbjct: 181 IISAKSTLAARIDSIRGDPTGKAGHSLLEEICKKTEKLQELPPAKILKPLPVPDCMPKKK 240
Query: 241 RGGCRLRKMKERYAQTDMMKLANRMQFGVPEEXXXXXXXXXXXXXXXXXXXXKLRLLAGQ 300
RGGCRLRKMKERYAQTDMMKLANRMQFGVPEE KLRLLAGQ
Sbjct: 241 RGGCRLRKMKERYAQTDMMKLANRMQFGVPEESSLGDGLGKGYGLLGQAGSGKLRLLAGQ 300
Query: 301 SRLAAKVAKRFKARSCDRSESRSGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSD 360
SRLAAKVAKRFKARSCDRSESRSGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSD
Sbjct: 301 SRLAAKVAKRFKARSCDRSESRSGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSD 360
Query: 361 VGTFSSIRGKDAIPIQSSEIQNPGV 385
VGTFSSIRGKDAIPIQSSEIQNPGV
Sbjct: 361 VGTFSSIRGKDAIPIQSSEIQNPGV 385
>Os07g0141600 Similar to Serologically defined breast cancer antigen NY-BR-99
Length = 484
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/233 (71%), Positives = 185/233 (79%)
Query: 136 MQLLGAKKKNLSGFSTAASQFRVGYLEQTEVFQSTIPSLRTHACRIISAKSTLAARIDSI 195
+QLLGAKKKNL+GFS+A SQFRVGYLEQTEVFQST P+LRT ACR+I+AKSTLAARI+SI
Sbjct: 250 VQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLIAAKSTLAARINSI 309
Query: 196 RGDPTGKAGHSLLEEICKKTEKLQELPPAKILKPLPVPDCMPKKKRGGCRLRKMKERYAQ 255
RGDPTGKAG +LLEEI KK EK QE PPAK+ KPLPVPD PKKKRGG RLRKMKERYAQ
Sbjct: 310 RGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDSEPKKKRGGRRLRKMKERYAQ 369
Query: 256 TDMMKLANRMQFGVPEEXXXXXXXXXXXXXXXXXXXXKLRLLAGQSRLAAKVAKRFKARS 315
TDMMKLANRMQFGVPEE KLR+ A QS+LAAKVAK+FK +S
Sbjct: 370 TDMMKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVAKKFKEKS 429
Query: 316 CDRSESRSGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIR 368
S + SGLTS+LAFTPVQG+ELSNP H + SGTQSTYFS+ GTFS I+
Sbjct: 430 YGSSGATSGLTSSLAFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSKIK 482
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/67 (70%), Positives = 52/67 (77%)
Query: 71 ASLPDSFLADLDELSDNEAYPEGEDEEARNMEEDGDGGMPCCEFLNHDDLNSASELHKTQ 130
ASL DSFLADLDELSDNEAYPE E+ EA M+EDG M E LN+DDL+S S+L KTQ
Sbjct: 2 ASLADSFLADLDELSDNEAYPEEENAEAVGMDEDGGEDMLDLESLNYDDLDSVSKLQKTQ 61
Query: 131 RYNDIMQ 137
YNDIMQ
Sbjct: 62 CYNDIMQ 68
>Os04g0555400 Similar to Serologically defined breast cancer antigen NY-BR-99
Length = 484
Score = 296 bits (758), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/233 (69%), Positives = 182/233 (78%)
Query: 136 MQLLGAKKKNLSGFSTAASQFRVGYLEQTEVFQSTIPSLRTHACRIISAKSTLAARIDSI 195
+QLLGAK+KNL+GFSTA SQFRVGYLEQT+VFQST P+LRT ACR+I+AKSTLAARIDSI
Sbjct: 250 VQLLGAKRKNLAGFSTATSQFRVGYLEQTDVFQSTPPALRTRACRLIAAKSTLAARIDSI 309
Query: 196 RGDPTGKAGHSLLEEICKKTEKLQELPPAKILKPLPVPDCMPKKKRGGCRLRKMKERYAQ 255
RGDPTGKAG +LLEEI KK EK QE PPAK+ KPLPVPD PKKKRGG RLRKMKERYAQ
Sbjct: 310 RGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDFEPKKKRGGRRLRKMKERYAQ 369
Query: 256 TDMMKLANRMQFGVPEEXXXXXXXXXXXXXXXXXXXXKLRLLAGQSRLAAKVAKRFKARS 315
TDMMKLANRMQFGVPEE KLR+ S+L+AK+ K+FK +S
Sbjct: 370 TDMMKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSTAPSKLSAKITKKFKEKS 429
Query: 316 CDRSESRSGLTSTLAFTPVQGMELSNPLVHNDHSVSGTQSTYFSDVGTFSSIR 368
S + SGLTS+LAFTPVQG+ELSNP H + SGTQSTYFS+ GTFS I+
Sbjct: 430 YGSSGATSGLTSSLAFTPVQGIELSNPQAHGNLLGSGTQSTYFSETGTFSKIK 482
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 53/67 (79%)
Query: 71 ASLPDSFLADLDELSDNEAYPEGEDEEARNMEEDGDGGMPCCEFLNHDDLNSASELHKTQ 130
ASL DSFLADLDELSDNEAYPE E+ EA EE GD MP E LN+DDL+S S+L KTQ
Sbjct: 2 ASLADSFLADLDELSDNEAYPEEENAEAVGTEEIGDDDMPDLESLNYDDLDSVSKLQKTQ 61
Query: 131 RYNDIMQ 137
RYNDIMQ
Sbjct: 62 RYNDIMQ 68
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,547,168
Number of extensions: 521385
Number of successful extensions: 1680
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1677
Number of HSP's successfully gapped: 5
Length of query: 385
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 282
Effective length of database: 11,657,759
Effective search space: 3287488038
Effective search space used: 3287488038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)