BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0133500 Os07g0133500|AK106244
(462 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0133500 Protein of unknown function DUF1005 family pro... 717 0.0
Os03g0773000 Protein of unknown function DUF1005 family pro... 441 e-124
Os08g0163500 Protein of unknown function DUF1005 family pro... 203 2e-52
Os01g0740400 Protein of unknown function DUF1005 family pro... 186 3e-47
>Os07g0133500 Protein of unknown function DUF1005 family protein
Length = 462
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/462 (80%), Positives = 370/462 (80%)
Query: 1 MDPCPFVRVLVGNLSLKMXXXXXXXXXXXXXXXSTSPCYCKIRLNKLPYQTXXXXXXXXX 60
MDPCPFVRVLVGNLSLKM STSPCYCKIRLNKLPYQT
Sbjct: 1 MDPCPFVRVLVGNLSLKMPVAPRPAGAGAGVHPSTSPCYCKIRLNKLPYQTADAPLLLPP 60
Query: 61 XXXXXXXXXXXXXXXXXXXXFHLSKADLDRLTAKPSLFGSRTARLKIVVYAXXXXXXXXX 120
FHLSKADLDRLTAKPSLFGSRTARLKIVVYA
Sbjct: 61 SPEASAAPAPAPATGALAAAFHLSKADLDRLTAKPSLFGSRTARLKIVVYAGRRGTTCGV 120
Query: 121 XXXXXXXXXKVVIPLDLKGASAKPVVYHSSWICIGKRGRKPSSVSAANAQLNITVRAEPD 180
KVVIPLDLKGASAKPVVYHSSWICIGKRGRKPSSVSAANAQLNITVRAEPD
Sbjct: 121 GGGSGRLLGKVVIPLDLKGASAKPVVYHSSWICIGKRGRKPSSVSAANAQLNITVRAEPD 180
Query: 181 PRFVFEFDGEPECSPQVLQVQGSMKQPMFTCKFSCRSNSDLRSRSMPADMGSGGRNWLTA 240
PRFVFEFDGEPECSPQVLQVQGSMKQPMFTCKFSCRSNSDLRSRSMPADMGSGGRNWLTA
Sbjct: 181 PRFVFEFDGEPECSPQVLQVQGSMKQPMFTCKFSCRSNSDLRSRSMPADMGSGGRNWLTA 240
Query: 241 FGSDRERAGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSKSNPGAWLVLRPGD 300
FGSDRERAGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSKSNPGAWLVLRPGD
Sbjct: 241 FGSDRERAGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSKSNPGAWLVLRPGD 300
Query: 301 GTWKPWGRLECWRERGAGAAAGDSLGYRFELVLPDPTGMGVGVSVAESTIPASKGGRFAI 360
GTWKPWGRLECWRERGAGAAAGDSLGYRFELVLPDPTGMGVGVSVAESTIPASKGGRFAI
Sbjct: 301 GTWKPWGRLECWRERGAGAAAGDSLGYRFELVLPDPTGMGVGVSVAESTIPASKGGRFAI 360
Query: 361 DLTATQQFXXXXXXXXXXXXXXDYGMWPFGSCRGFVMSAAVQGEGKCSRPAVEVGVQNVG 420
DLTATQQF DYGMWPFGSCRGFVMSAAVQGEGKCSRPAVEVGVQNVG
Sbjct: 361 DLTATQQFGRSGSPACSPCGSGDYGMWPFGSCRGFVMSAAVQGEGKCSRPAVEVGVQNVG 420
Query: 421 CXXXXXXXXXXXXXXXXSMDACRLFSHRLRRELSASRSDLLR 462
C SMDACRLFSHRLRRELSASRSDLLR
Sbjct: 421 CAEDAAAFVALAAAVDLSMDACRLFSHRLRRELSASRSDLLR 462
>Os03g0773000 Protein of unknown function DUF1005 family protein
Length = 444
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/471 (54%), Positives = 299/471 (63%), Gaps = 36/471 (7%)
Query: 1 MDPCPFVRVLVGNLSLKMXXXXXXXXXXXXXXXSTSPCYCKIRLNKLPYQTXXXXXXXXX 60
MDPCPFVRVLVGNL+L+M ST+PCYCKIRL ++P+Q
Sbjct: 1 MDPCPFVRVLVGNLALRMPVAPPAAGAGAGVHPSTAPCYCKIRLGRMPWQVAAAPLVVAD 60
Query: 61 XXXXXXXXXXXXXXXXXXXXFHLSKADLDRLTAKPSLFGSRT------ARLKIVVYAXXX 114
FHLSKADL+ KPSL S + A LK+ VYA
Sbjct: 61 GGEQAPSGALAAA-------FHLSKADLEWFARKPSLLFSSSSSSRGPATLKVAVYAGRK 113
Query: 115 XXXXXXXXXXXXXXXKVVIPLDLKGASAKPVVYHSSWICIGKRGRKPSSVSAANAQLNIT 174
K IP+DLKGA AK V HS WIC+GK+ +A A+L++T
Sbjct: 114 GTTCGVSSGRLIG--KATIPVDLKGAEAKAAVVHSGWICVGKK--SGGKGGSAAAELSLT 169
Query: 175 VRAEPDPRFVFEFDGEPECSPQVLQVQGSMKQPMFTCKFSCRSNSDLRSRSMPADMGSGG 234
VRAEPDPRFVFEFDGEPECSPQVLQV+GSMKQPMFTCKF CRSNSDLR + +
Sbjct: 170 VRAEPDPRFVFEFDGEPECSPQVLQVRGSMKQPMFTCKFGCRSNSDLRRSVVQTE----- 224
Query: 235 RNWLTAFGSDRERAGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSKSNPGAWL 294
R+ A AGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVS+SNPGAWL
Sbjct: 225 RDAAAA-------AGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSRSNPGAWL 277
Query: 295 VLRP-GDGTWKPWGRLECWRERGAGAAAGDSLGYRFELVLPDPTGMGVGVSVAESTIPAS 353
+LRP GDG+W+PWGRLECWRERG GA A +SLGYRF+L+LP G+ V +AES+I AS
Sbjct: 278 ILRPAGDGSWEPWGRLECWRERG-GAGASNSLGYRFDLLLP---GVDHAVPLAESSIAAS 333
Query: 354 KGGRFAIDLTATQQFXXXXXXXXXXXXXXDYGMWPFG--SCRGFVMSAAVQGEGKCSRPA 411
KGG+FAIDLT+ Q D+ WP S RGFVMS++VQGEG+CS+P
Sbjct: 334 KGGKFAIDLTSMQPQSRGGTPGCSPRGSGDFSQWPLASYSYRGFVMSSSVQGEGRCSKPT 393
Query: 412 VEVGVQNVGCXXXXXXXXXXXXXXXXSMDACRLFSHRLRRELSASRSDLLR 462
VEVGV +VGC SMDACRLFSH+LR+ELS RSD+LR
Sbjct: 394 VEVGVPHVGCAEDAAAFVALAAAVDLSMDACRLFSHKLRKELSHLRSDVLR 444
>Os08g0163500 Protein of unknown function DUF1005 family protein
Length = 439
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/472 (31%), Positives = 216/472 (45%), Gaps = 64/472 (13%)
Query: 1 MDPCPFVRVLVGNLSLKMXXXXXXXXXXXXXXXSTSPCYCKIRLNKLPYQTXXXXXXXXX 60
MDP FVR+ VG L LK+ + +C+IRL P Q
Sbjct: 1 MDPQIFVRLSVGQLGLKLPGANARK--------AARSFHCEIRLRGFPVQIAPVPLINYS 52
Query: 61 XXXXXXXXXXXXXXXXXXXXFHLSKADLDRLTAKPSLFGSRTARLKIVVYAXXXXXXXXX 120
F L +++L L+A P FG+ + L++ VY
Sbjct: 53 EFNLDPHTNAAV--------FSLDESELKALSA-PGCFGAHGSYLEVAVYVGRRGGHCGI 103
Query: 121 XXXXXXXXXKVVIPLDLKGASAKPVVYHSSWICIGKRGRKPSSVSAANAQLNITVRAEPD 180
V + + + KPV+ H W+ IG KP +L++ V+ E D
Sbjct: 104 VTGMKRLVGVVRMDIGPEWRDGKPVMLHHGWVGIGNGEAKP--------ELHLRVKMEAD 155
Query: 181 PRFVFEFDGEPECSPQVLQVQGSMKQPMFTCKFSCRSNSDLRSRSMPADMGSGGRNWLTA 240
PR++FEFD E +PQV+Q+ G +QP+F+CKF +R R S W ++
Sbjct: 156 PRYIFEFDDEVALNPQVVQLHGRNRQPIFSCKF-------IRDRR---GSHSDQLYWSSS 205
Query: 241 FGSDRERA---GKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSKSNPGAWLVLR 297
G ++E +ERKGW V +HDLSGS VA A M TPFVA+ G D V++SNPGAWL+ R
Sbjct: 206 GGEEKEAEMMRRRERKGWKVVIHDLSGSAVAAAFMATPFVAASGCDTVARSNPGAWLIAR 265
Query: 298 PGDG------------TWKPWGRLECWRERGAGAAAGDSLGYRFELVLPDPTGMGVGVSV 345
G +W+PWGRLE WR++G GAA D++ R L+ P G + V
Sbjct: 266 AGATAPGSTSSSAAVESWQPWGRLEAWRDQG-GAARQDTVCLRLRLL---PDGQDACMLV 321
Query: 346 AESTIPASKGGRFAIDLTATQQFXXXXXXXXXXXXXXDYGMWPFGSCRGFVMSAAVQGEG 405
AE+ + + +GG FAID+ G G GFVMS V+GE
Sbjct: 322 AETPLRSDRGGEFAIDMDRQ----APALAAGAEHCAASLGEACAGG--GFVMSCRVEGES 375
Query: 406 KCSRPAVEVGVQNVGCXXXXXXXXXXXXXXXXSMDACRLFSHRLRRELSASR 457
+ SRP V++ +++V C S+ ACR F RR+ +A++
Sbjct: 376 RSSRPLVQLAMRHVTCMEDAAMFVALAAAVDLSVKACRPF----RRKTTATK 423
>Os01g0740400 Protein of unknown function DUF1005 family protein
Length = 302
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 133/231 (57%), Gaps = 26/231 (11%)
Query: 235 RNWLTAFGSDRERAGK--ERKGWSVTVHDLSGSPVALASMVTPFVASP-GTDRVSKSNPG 291
R+WL+ DR+ + +RKGW+VT+HDLSGSPVA+ASMVTPFV SP G+ RVS++NPG
Sbjct: 92 RSWLSTLHGDRDAQARREQRKGWTVTIHDLSGSPVAMASMVTPFVPSPAGSGRVSRANPG 151
Query: 292 AWLVLRP---GDGTWKPWGRLECWRERGAGAAAGDSLGYRFELVLPDPTGMGVGVSVAES 348
AWL+L+P G +WKPW RLE WRERG D+LGYR ELV D V +AES
Sbjct: 152 AWLILQPTGAGPASWKPWARLEAWRERG----PVDALGYRLELVF-DSGPTECAVPIAES 206
Query: 349 TIPASKGGRFAIDLTATQQFXXXXXXXXXXXXXXDYGMWPFGSCRGFVMSAAVQGEGKCS 408
+I +GG+F ID WPF GFVM + +GEG+ S
Sbjct: 207 SISTKRGGQFVID-------------PATFPVGAAGAAWPFAG--GFVMGSTAEGEGRAS 251
Query: 409 RPAVEVGVQNVGCXXXXXXXXXXXXXXXXSMDACRLFSHRLRRELSASRSD 459
RP V+VGVQ+ C MDAC+LFS RLR+EL + D
Sbjct: 252 RPTVQVGVQHATCMGDVALFVALAAAVDLCMDACKLFSQRLRKELCHDQED 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,729,042
Number of extensions: 567449
Number of successful extensions: 1255
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1234
Number of HSP's successfully gapped: 4
Length of query: 462
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 358
Effective length of database: 11,605,545
Effective search space: 4154785110
Effective search space used: 4154785110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)