Os07g0133500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1005 family protein.
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Os07g0133500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1005 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 513.66 | 1.06 | 7.35 | -2.52 | 2.04 | 2.9 | 1.66 | -7.68 | -0.247 | 22.8 | 25.99 | 871 | 7.02 | -- |
| 521.09 | 1.06 | 7.21 | -1.3 | 2.16 | 1.98 | 1.41 | -- | -0.0462 | 22.9 | 26.29 | 946 | 8.01 | -- |
| 523.47 | 1.07 | 7.31 | -2.33 | 2.1 | 2.67 | -- | -5.9 | -0.162 | 22.7 | 26.23 | 910 | 7.12 | -- |
| 526.8 | 1.07 | 7.21 | -1.37 | 2.13 | 2.04 | -- | -- | -0.0409 | 22.7 | 26.2 | 928 | 7.67 | -- |
| 685.69 | 1.22 | 7.38 | -2.67 | -- | 3.97 | -- | -5.64 | -0.908 | -- | 21.55 | 719 | 11.2 | -- |
| 645.66 | 1.19 | 7.22 | -0.837 | 2.57 | -- | 1.79 | -- | -0.103 | 23.4 | -- | -- | -- | -- |
| 659.31 | 1.2 | 7.22 | -0.908 | 2.56 | -- | -- | -- | -0.109 | 23.3 | -- | -- | -- | -- |
| 573.84 | 1.12 | 7.23 | -1.54 | -- | 4.12 | -- | -- | -0.396 | -- | 0.03498 | 1011 | 15 | -- |
| 574.24 | 1.12 | 7.18 | -- | 2.18 | 1.82 | -- | -- | 0.101 | 22.7 | 26.3 | 928 | 7.84 | -- |
| 1069.27 | 1.53 | 7.16 | -0.844 | -- | -- | -- | -- | -0.0848 | -- | -- | -- | -- | -- |
| 681.03 | 1.22 | 7.2 | -- | 2.55 | -- | -- | -- | -0.00791 | 23.3 | -- | -- | -- | -- |
| 629.41 | 1.17 | 7.16 | -- | -- | 3.66 | -- | -- | -0.159 | -- | -4.606 | 939 | 14.4 | -- |
| 1088.04 | 1.54 | 7.14 | -- | -- | -- | -- | -- | 0.00882 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 506.48 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 30 | 513.80 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 31 | 514.32 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 37 | 519.70 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 38 | 519.74 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 50 | 519.84 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 51 | 519.86 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 2 |
| 87 | 524.37 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 109 | 526.17 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 111 | 526.42 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 122 | 526.83 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 123 | 526.90 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 13 |
| 180 | 527.84 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 1 |
| 182 | 528.30 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 271 | 533.64 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 277 | 533.80 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 8 |
| 295 | 533.88 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 310 | 534.06 | humidity | 60 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 314 | 534.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 352 | 535.07 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 354 | 535.18 | wind | 1 | 90 | < th | dose independent | rect. | 4 | 1 |
| 357 | 535.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 362 | 535.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 403 | 536.94 | humidity | 60 | 1440 | < th | dose independent | sin | 12 | NA |
| 456 | 538.10 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 1 |
| 459 | 538.23 | humidity | 60 | 1440 | > th | dose independent | sin | 12 | NA |
| 480 | 538.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 533 | 539.74 | humidity | 70 | 1440 | < th | dose dependent | sin | 12 | NA |
| 627 | 541.01 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 21 |
| 628 | 541.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 631 | 541.14 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 22 |
| 632 | 541.19 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 634 | 541.20 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 669 | 541.80 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 689 | 542.11 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 19 |
| 690 | 542.13 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 697 | 542.26 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 17 |
| 700 | 542.29 | wind | 7 | 43200 | > th | dose dependent | rect. | 1 | 17 |
| 715 | 542.56 | wind | 9 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 747 | 542.88 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 20 |
| 756 | 542.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 779 | 543.27 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 800 | 543.54 | wind | 9 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 827 | 543.74 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 849 | 543.80 | wind | 9 | 43200 | > th | dose independent | no | NA | NA |
| 850 | 543.80 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 886 | 543.97 | wind | 9 | 43200 | < th | dose independent | no | NA | NA |
| 929 | 544.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 953 | 544.29 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 959 | 544.30 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 965 | 544.32 | wind | 7 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 966 | 544.34 | wind | 9 | 43200 | > th | dose independent | rect. | 7 | 13 |
| 981 | 544.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 984 | 544.43 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |