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Os03g0773000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1005 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0235) R2 : 0.327
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.828 (0.0564) R2dC : 0.319 R2C : 0.314
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.127 (0.0495) R2dN8 : 0.0125 R2N8 : 0.00782
σ : 0.444
deviance : 89.89
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
78.22 0.416 12.3 -0.0781 0.787 0.546 0.617 0.329 -0.0166 23.1 68.01 1841 -- --
78.37 0.412 12.3 -0.0933 0.786 0.571 0.624 -- -0.0117 23.1 68.65 1840 -- --
79.83 0.416 12.3 -0.102 0.785 0.55 -- 0.392 -0.0177 23 68 1840 -- --
80.04 0.417 12.3 -0.118 0.783 0.584 -- -- -0.0136 23.1 68.34 1840 -- --
102.32 0.471 12.3 -0.0397 -- 1.06 -- 0.733 -0.113 -- 90.32 904 -- --
87.82 0.439 12.3 0.0222 0.831 -- 0.703 -- -0.125 22.9 -- -- -- --
89.89 0.444 12.3 -0.00593 0.828 -- -- -- -0.127 22.8 -- -- -- --
103.23 0.473 12.3 -0.0734 -- 1.09 -- -- -0.12 -- 90 904 -- --
80.41 0.418 12.3 -- 0.783 0.565 -- -- -0.0131 23.1 68.58 1840 -- --
132.33 0.538 12.3 0.0111 -- -- -- -- -0.122 -- -- -- -- --
89.89 0.444 12.3 -- 0.828 -- -- -- -0.127 22.8 -- -- -- --
103.32 0.473 12.3 -- -- 1.09 -- -- -0.124 -- 92 889 -- --
132.34 0.537 12.3 -- -- -- -- -- -0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 67.63 temperature 10.0 90 > th dose dependent rect. 17 2
3 68.13 radiation 40.0 90 < th dose dependent rect. 15 4
4 68.42 wind 7.0 90 < th dose independent rect. 17 2
7 68.56 wind 3.0 90 > th dose independent rect. 17 2
10 68.79 temperature 15.0 90 > th dose independent rect. 19 22
11 68.87 temperature 10.0 90 > th dose independent rect. 17 2
13 68.87 atmosphere 1010.0 90 < th dose independent rect. 17 2
15 68.87 radiation 20.0 90 < th dose independent rect. 17 2
19 68.87 atmosphere 995.0 90 > th dose independent rect. 19 22
20 68.90 radiation 20.0 90 < th dose independent rect. 15 4
21 69.05 precipitation 0.1 90 < th dose independent rect. 17 2
22 69.05 precipitation 0.1 90 < th dose dependent rect. 17 2
25 69.32 wind 9.0 90 < th dose independent rect. 19 22
27 69.42 atmosphere 995.0 90 > th dose independent rect. 17 2
28 69.44 humidity 90.0 90 < th dose independent rect. 17 2
29 69.49 wind 9.0 90 < th dose dependent rect. 17 2
30 69.53 radiation 40.0 90 < th dose dependent rect. 17 2
32 69.64 temperature 15.0 10 > th dose independent rect. 19 23
34 69.71 wind 7.0 90 < th dose independent rect. 15 4
39 70.01 atmosphere 1010.0 30 < th dose dependent rect. 18 1
43 70.14 humidity 90.0 30 < th dose dependent rect. 18 1
50 70.30 temperature 15.0 90 > th dose independent rect. 19 20
52 70.39 wind 5.0 10 < th dose independent rect. 18 1
53 70.39 wind 7.0 10 < th dose dependent rect. 18 1
55 70.41 precipitation 0.1 90 < th dose independent rect. 19 22
57 70.41 precipitation 0.1 90 < th dose dependent rect. 19 22
58 70.45 temperature 15.0 90 > th dose independent rect. 19 8
61 70.46 atmosphere 1005.0 10 > th dose independent rect. 18 1
77 70.63 temperature 10.0 10 > th dose independent rect. 18 1
79 70.63 humidity 50.0 10 > th dose independent rect. 18 1
80 70.63 atmosphere 1010.0 10 < th dose independent rect. 18 1
82 70.63 radiation 20.0 10 < th dose independent rect. 18 1
85 70.63 precipitation 0.1 10 < th dose independent rect. 18 1
88 70.63 radiation 40.0 10 < th dose dependent rect. 18 1
89 70.63 precipitation 0.1 10 < th dose dependent rect. 18 1
90 70.64 wind 1.0 30 > th dose dependent rect. 18 1
92 70.64 wind 9.0 90 < th dose dependent rect. 15 4
95 70.66 humidity 50.0 90 > th dose independent rect. 17 2
100 70.71 wind 1.0 90 > th dose independent rect. 15 4
102 70.73 wind 9.0 10 < th dose independent rect. 18 1
118 70.75 atmosphere 995.0 10 > th dose independent rect. 18 1
122 70.78 wind 9.0 10 < th dose independent rect. 19 23
129 70.83 atmosphere 995.0 90 > th dose independent rect. 19 20
130 70.83 humidity 50.0 90 > th dose independent rect. 19 22
132 70.84 temperature 10.0 90 > th dose independent rect. 15 4
134 70.84 atmosphere 1010.0 90 < th dose independent rect. 15 4
149 70.93 precipitation 0.1 90 < th dose independent rect. 15 4
150 70.93 precipitation 0.1 90 < th dose dependent rect. 15 4
159 71.02 atmosphere 995.0 90 > th dose dependent rect. 17 2
161 71.04 wind 9.0 90 < th dose independent rect. 19 20
166 71.11 atmosphere 995.0 10 > th dose independent rect. 19 23
188 71.42 humidity 50.0 90 > th dose independent rect. 19 20
204 71.58 precipitation 0.1 90 < th dose independent rect. 19 20
205 71.58 precipitation 0.1 90 < th dose dependent rect. 19 20
207 71.62 wind 9.0 90 < th dose independent rect. 3 16
209 71.67 wind 9.0 90 < th dose independent rect. 19 8
211 71.69 temperature 30.0 90 < th dose independent rect. 19 8
212 71.69 humidity 50.0 90 > th dose independent rect. 19 8
214 71.69 atmosphere 995.0 90 > th dose independent rect. 19 8
215 71.69 radiation 1.0 90 < th dose independent rect. 19 8
220 71.69 temperature 10.0 90 > th dose independent rect. 3 16
221 71.69 atmosphere 1015.0 90 < th dose independent rect. 3 16
222 71.69 radiation 1.0 90 < th dose dependent rect. 19 8
228 71.72 precipitation 0.1 90 < th dose independent rect. 3 16
229 71.72 precipitation 0.1 90 < th dose dependent rect. 3 16
230 71.73 radiation 1.0 90 > th dose independent rect. 17 2
259 71.88 humidity 50.0 270 > th dose independent rect. 17 22
278 72.05 temperature 10.0 270 > th dose independent rect. 17 22
309 72.36 precipitation 0.1 10 < th dose independent rect. 19 23
310 72.36 precipitation 0.1 10 < th dose dependent rect. 19 23
320 72.39 temperature 10.0 90 > th dose dependent rect. 19 20
321 72.41 atmosphere 1015.0 90 < th dose independent rect. 19 22
326 72.47 radiation 1.0 270 > th dose independent rect. 14 5
330 72.47 precipitation 0.1 90 < th dose independent rect. 19 8
337 72.47 precipitation 0.1 90 < th dose dependent rect. 19 8
357 72.61 radiation 1.0 270 > th dose independent rect. 15 2
375 72.82 wind 9.0 270 < th dose independent rect. 17 22
376 72.83 atmosphere 995.0 270 > th dose independent rect. 17 22
380 72.84 temperature 15.0 10 > th dose independent rect. 20 19
390 72.94 atmosphere 1015.0 90 < th dose independent rect. 19 20
428 73.12 atmosphere 1010.0 90 < th dose independent rect. 19 8
502 73.34 radiation 1.0 270 > th dose dependent rect. 15 16
504 73.37 humidity 50.0 90 > th dose dependent rect. 19 8
520 73.46 radiation 1.0 270 < th dose independent rect. 17 9
523 73.48 atmosphere 995.0 90 > th dose independent rect. 3 16
528 73.49 radiation 1.0 270 > th dose dependent rect. 15 3
542 73.51 radiation 1.0 270 < th dose dependent rect. 17 9
556 73.61 humidity 70.0 270 < th dose independent rect. 15 1
587 73.74 radiation 30.0 43200 < th dose independent rect. 17 3
607 73.81 humidity 50.0 10 > th dose dependent rect. 18 1
615 73.84 temperature 10.0 90 > th dose dependent rect. 19 8
617 73.87 wind 1.0 270 > th dose independent rect. 14 15
651 74.03 precipitation 0.1 270 < th dose independent rect. 14 16
653 74.03 precipitation 0.1 270 < th dose dependent rect. 14 16
672 74.11 radiation 1.0 270 > th dose independent sin 14 NA
677 74.11 precipitation 0.1 270 < th dose independent rect. 17 22
681 74.11 precipitation 0.1 270 < th dose dependent rect. 17 22
682 74.14 radiation 1.0 270 < th dose independent sin 14 NA
694 74.16 radiation 10.0 10 < th dose dependent rect. 6 13
695 74.16 radiation 10.0 10 < th dose dependent rect. 4 15
722 74.18 wind 1.0 10 > th dose independent rect. 15 5
724 74.18 temperature 10.0 10 > th dose independent rect. 15 5
726 74.18 atmosphere 1010.0 10 < th dose independent rect. 15 5
729 74.18 atmosphere 995.0 10 > th dose independent rect. 20 19
760 74.22 radiation 10.0 30 < th dose dependent rect. 8 11
768 74.23 wind 9.0 90 < th dose dependent rect. 3 16
772 74.24 radiation 1.0 270 < th dose dependent sin 15 NA
778 74.26 wind 9.0 10 < th dose independent rect. 20 19
789 74.27 humidity 90.0 270 < th dose dependent rect. 15 2
793 74.28 atmosphere 995.0 270 > th dose dependent rect. 15 1
835 74.34 temperature 10.0 1440 > th dose independent rect. 16 5
838 74.34 temperature 10.0 1440 > th dose independent rect. 21 19
842 74.34 temperature 10.0 10 > th dose dependent rect. 20 20
856 74.37 radiation 40.0 90 < th dose dependent rect. 3 16
858 74.38 radiation 1.0 270 < th dose dependent rect. 7 19
864 74.40 radiation 1.0 270 < th dose independent rect. 7 19
866 74.41 radiation 1.0 270 < th dose dependent rect. 10 16
912 74.50 wind 9.0 90 < th dose dependent rect. 19 8
914 74.51 radiation 1.0 270 < th dose independent rect. 10 16
923 74.54 humidity 50.0 10 > th dose independent rect. 20 19
949 74.61 radiation 30.0 1440 < th dose independent rect. 17 3
963 74.62 wind 1.0 270 > th dose dependent rect. 15 2
989 74.67 humidity 50.0 1440 > th dose independent rect. 18 2