BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0773000 Os03g0773000|AK100695
(444 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0773000 Protein of unknown function DUF1005 family pro... 773 0.0
Os07g0133500 Protein of unknown function DUF1005 family pro... 513 e-145
Os08g0163500 Protein of unknown function DUF1005 family pro... 240 2e-63
Os01g0740400 Protein of unknown function DUF1005 family pro... 198 9e-51
>Os03g0773000 Protein of unknown function DUF1005 family protein
Length = 444
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/444 (88%), Positives = 392/444 (88%)
Query: 1 MDPCPFVRVLVGNLALRMXXXXXXXXXXXXXHPSTAPCYCKIRLGRMPWQVAAAPLVVAD 60
MDPCPFVRVLVGNLALRM HPSTAPCYCKIRLGRMPWQVAAAPLVVAD
Sbjct: 1 MDPCPFVRVLVGNLALRMPVAPPAAGAGAGVHPSTAPCYCKIRLGRMPWQVAAAPLVVAD 60
Query: 61 GGEQAPSGALAAAFHLSKADLEWFARKPXXXXXXXXXXRGPATLKVAVYAGRKGTTCGVS 120
GGEQAPSGALAAAFHLSKADLEWFARKP RGPATLKVAVYAGRKGTTCGVS
Sbjct: 61 GGEQAPSGALAAAFHLSKADLEWFARKPSLLFSSSSSSRGPATLKVAVYAGRKGTTCGVS 120
Query: 121 SGRLIGKATIPVDLKGAEAKAAVVHSGWICVXXXXXXXXXXXXXELSLTVRAEPDPRFVF 180
SGRLIGKATIPVDLKGAEAKAAVVHSGWICV ELSLTVRAEPDPRFVF
Sbjct: 121 SGRLIGKATIPVDLKGAEAKAAVVHSGWICVGKKSGGKGGSAAAELSLTVRAEPDPRFVF 180
Query: 181 EFDGEPECSPQVLQVRGSMKQPMFTCKFGCRSNSDLRRSVVQTERDAAAAAGKERKGWSV 240
EFDGEPECSPQVLQVRGSMKQPMFTCKFGCRSNSDLRRSVVQTERDAAAAAGKERKGWSV
Sbjct: 181 EFDGEPECSPQVLQVRGSMKQPMFTCKFGCRSNSDLRRSVVQTERDAAAAAGKERKGWSV 240
Query: 241 TVHDLSGSPVALASMVTPFVASPGTDRVSRSNPGAWLILRPAGDGSWEPWGRLECWRERG 300
TVHDLSGSPVALASMVTPFVASPGTDRVSRSNPGAWLILRPAGDGSWEPWGRLECWRERG
Sbjct: 241 TVHDLSGSPVALASMVTPFVASPGTDRVSRSNPGAWLILRPAGDGSWEPWGRLECWRERG 300
Query: 301 GAGASNSLGYRFDLLLPGVDHAVPLAESSIAASKGGKFAIDLTSMQPQSRGGTPGCSPRG 360
GAGASNSLGYRFDLLLPGVDHAVPLAESSIAASKGGKFAIDLTSMQPQSRGGTPGCSPRG
Sbjct: 301 GAGASNSLGYRFDLLLPGVDHAVPLAESSIAASKGGKFAIDLTSMQPQSRGGTPGCSPRG 360
Query: 361 SGDFSQWPLASYSYRGFVMSSSVQGEGRCSKPTVEVGVPHVGCXXXXXXXXXXXXXXXXS 420
SGDFSQWPLASYSYRGFVMSSSVQGEGRCSKPTVEVGVPHVGC S
Sbjct: 361 SGDFSQWPLASYSYRGFVMSSSVQGEGRCSKPTVEVGVPHVGCAEDAAAFVALAAAVDLS 420
Query: 421 MDACRLFSHKLRKELSHLRSDVLR 444
MDACRLFSHKLRKELSHLRSDVLR
Sbjct: 421 MDACRLFSHKLRKELSHLRSDVLR 444
>Os07g0133500 Protein of unknown function DUF1005 family protein
Length = 462
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/471 (59%), Positives = 326/471 (69%), Gaps = 36/471 (7%)
Query: 1 MDPCPFVRVLVGNLALRMXXXXXXXXXXXXXHPSTAPCYCKIRLGRMPWQVAAAPLVVAD 60
MDPCPFVRVLVGNL+L+M HPST+PCYCKIRL ++P+Q A APL++
Sbjct: 1 MDPCPFVRVLVGNLSLKMPVAPRPAGAGAGVHPSTSPCYCKIRLNKLPYQTADAPLLLPP 60
Query: 61 GGEQAPSGALAAA-------FHLSKADLEWFARKPXXXXXXXXXXRGPATLKVAVYAGRK 113
E + + A A A FHLSKADL+ KP A LK+ VYAGR+
Sbjct: 61 SPEASAAPAPAPATGALAAAFHLSKADLDRLTAKPSLFGSRT------ARLKIVVYAGRR 114
Query: 114 GTTCGVS--SGRLIGKATIPVDLKGAEAKAAVVHSGWICVXXX--XXXXXXXXXXELSLT 169
GTTCGV SGRL+GK IP+DLKGA AK V HS WIC+ +L++T
Sbjct: 115 GTTCGVGGGSGRLLGKVVIPLDLKGASAKPVVYHSSWICIGKRGRKPSSVSAANAQLNIT 174
Query: 170 VRAEPDPRFVFEFDGEPECSPQVLQVRGSMKQPMFTCKFGCRSNSDLRRSVVQTERDAAA 229
VRAEPDPRFVFEFDGEPECSPQVLQV+GSMKQPMFTCKF CRSNSDLR + + +
Sbjct: 175 VRAEPDPRFVFEFDGEPECSPQVLQVQGSMKQPMFTCKFSCRSNSDLRSRSMPADMGSGG 234
Query: 230 ------------AAGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSRSNPGAWL 277
AGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVS+SNPGAWL
Sbjct: 235 RNWLTAFGSDRERAGKERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSKSNPGAWL 294
Query: 278 ILRPAGDGSWEPWGRLECWRERG-GAGASNSLGYRFDLLLP---GVDHAVPLAESSIAAS 333
+LRP GDG+W+PWGRLECWRERG GA A +SLGYRF+L+LP G+ V +AES+I AS
Sbjct: 295 VLRP-GDGTWKPWGRLECWRERGAGAAAGDSLGYRFELVLPDPTGMGVGVSVAESTIPAS 353
Query: 334 KGGKFAIDLTSMQPQSRGGTPGCSPRGSGDFSQWPLASYSYRGFVMSSSVQGEGRCSKPT 393
KGG+FAIDLT+ Q R G+P CSP GSGD+ WP S RGFVMS++VQGEG+CS+P
Sbjct: 354 KGGRFAIDLTATQQFGRSGSPACSPCGSGDYGMWPFG--SCRGFVMSAAVQGEGKCSRPA 411
Query: 394 VEVGVPHVGCXXXXXXXXXXXXXXXXSMDACRLFSHKLRKELSHLRSDVLR 444
VEVGV +VGC SMDACRLFSH+LR+ELS RSD+LR
Sbjct: 412 VEVGVQNVGCAEDAAAFVALAAAVDLSMDACRLFSHRLRRELSASRSDLLR 462
>Os08g0163500 Protein of unknown function DUF1005 family protein
Length = 439
Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 223/448 (49%), Gaps = 48/448 (10%)
Query: 1 MDPCPFVRVLVGNLALRMXXXXXXXXXXXXXHPSTAPCYCKIRLGRMPWQVAAAPLVVAD 60
MDP FVR+ VG L L++ + +C+IRL P Q+A PL+
Sbjct: 1 MDPQIFVRLSVGQLGLKLPGANA--------RKAARSFHCEIRLRGFPVQIAPVPLINYS 52
Query: 61 GGEQAPSGALAAAFHLSKADLEWFARKPXXXXXXXXXXRGPATLKVAVYAGRKGTTCGVS 120
P AA F L +++L+ + + L+VAVY GR+G CG+
Sbjct: 53 EFNLDPH-TNAAVFSLDESELKALSAPGCFGAHG-------SYLEVAVYVGRRGGHCGIV 104
Query: 121 SG--RLIGKATIPVDLKGAEAKAAVVHSGWICVXXXXXXXXXXXXXELSLTVRAEPDPRF 178
+G RL+G + + + + K ++H GW+ + EL L V+ E DPR+
Sbjct: 105 TGMKRLVGVVRMDIGPEWRDGKPVMLHHGWVGIGNGEAKP------ELHLRVKMEADPRY 158
Query: 179 VFEFDGEPECSPQVLQVRGSMKQPMFTCKF-----GCRSNSDLRRSVVQTERDAAAAAGK 233
+FEFD E +PQV+Q+ G +QP+F+CKF G S+ S E++A +
Sbjct: 159 IFEFDDEVALNPQVVQLHGRNRQPIFSCKFIRDRRGSHSDQLYWSSSGGEEKEAEMMRRR 218
Query: 234 ERKGWSVTVHDLSGSPVALASMVTPFVASPGTDRVSRSNPGAWLILR-----------PA 282
ERKGW V +HDLSGS VA A M TPFVA+ G D V+RSNPGAWLI R A
Sbjct: 219 ERKGWKVVIHDLSGSAVAAAFMATPFVAASGCDTVARSNPGAWLIARAGATAPGSTSSSA 278
Query: 283 GDGSWEPWGRLECWRERGGAGASNSLGYRFDLLLPGVDHAVPLAESSIAASKGGKFAIDL 342
SW+PWGRLE WR++GGA +++ R LL G D + +AE+ + + +GG+FAID+
Sbjct: 279 AVESWQPWGRLEAWRDQGGAARQDTVCLRLRLLPDGQDACMLVAETPLRSDRGGEFAIDM 338
Query: 343 TSMQPQSRGGTPGCSPRGSGDFSQWPLASYSYRGFVMSSSVQGEGRCSKPTVEVGVPHVG 402
P G C+ + + GFVMS V+GE R S+P V++ + HV
Sbjct: 339 DRQAPALAAGAEHCAASLG--------EACAGGGFVMSCRVEGESRSSRPLVQLAMRHVT 390
Query: 403 CXXXXXXXXXXXXXXXXSMDACRLFSHK 430
C S+ ACR F K
Sbjct: 391 CMEDAAMFVALAAAVDLSVKACRPFRRK 418
>Os01g0740400 Protein of unknown function DUF1005 family protein
Length = 302
Score = 198 bits (503), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 122/263 (46%), Positives = 156/263 (59%), Gaps = 29/263 (11%)
Query: 187 ECSPQVLQVRGSMKQPMFTCKFGCRSNSDLRRSVVQT---ERDAAAAAGKERKGWSVTVH 243
E +L V + + + + RS S RS + T +RDA A ++RKGW+VT+H
Sbjct: 61 ELVKLILHVLFVLSRSLTSESSMTRSTSRKLRSWLSTLHGDRDAQARR-EQRKGWTVTIH 119
Query: 244 DLSGSPVALASMVTPFVASP-GTDRVSRSNPGAWLILRPAGDG--SWEPWGRLECWRERG 300
DLSGSPVA+ASMVTPFV SP G+ RVSR+NPGAWLIL+P G G SW+PW RLE WRERG
Sbjct: 120 DLSGSPVAMASMVTPFVPSPAGSGRVSRANPGAWLILQPTGAGPASWKPWARLEAWRERG 179
Query: 301 GAGASNSLGYRFDLLLPG--VDHAVPLAESSIAASKGGKFAIDLTSMQPQSRGGTPGCSP 358
++LGYR +L+ + AVP+AESSI+ +GG+F ID P P
Sbjct: 180 PV---DALGYRLELVFDSGPTECAVPIAESSISTKRGGQFVID------------PATFP 224
Query: 359 RGSGDFSQWPLASYSYRGFVMSSSVQGEGRCSKPTVEVGVPHVGCXXXXXXXXXXXXXXX 418
G+ + WP A GFVM S+ +GEGR S+PTV+VGV H C
Sbjct: 225 VGAAG-AAWPFAG----GFVMGSTAEGEGRASRPTVQVGVQHATCMGDVALFVALAAAVD 279
Query: 419 XSMDACRLFSHKLRKELSHLRSD 441
MDAC+LFS +LRKEL H + D
Sbjct: 280 LCMDACKLFSQRLRKELCHDQED 302
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,520,503
Number of extensions: 704963
Number of successful extensions: 1822
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1799
Number of HSP's successfully gapped: 4
Length of query: 444
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 340
Effective length of database: 11,605,545
Effective search space: 3945885300
Effective search space used: 3945885300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)