BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0113200 Os07g0113200|AK108787
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0113200 Conserved hypothetical protein 190 2e-49
Os07g0110800 Conserved hypothetical protein 122 5e-29
Os07g0109800 Conserved hypothetical protein 91 1e-19
Os03g0583300 88 2e-18
>Os07g0113200 Conserved hypothetical protein
Length = 117
Score = 190 bits (483), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/117 (83%), Positives = 98/117 (83%)
Query: 1 MSAAWMLSRAVSQXXXXXXXXXXXXXXXXXXXGKVKRIERFDEFEEMVQREIVEDVEKVE 60
MSAAWMLSRAVSQ GKVKRIERFDEFEEMVQREIVEDVEKVE
Sbjct: 1 MSAAWMLSRAVSQRLLRHRSRSFCSSLSSSSSGKVKRIERFDEFEEMVQREIVEDVEKVE 60
Query: 61 RAKTEDRDCINRLLTSCGMPKGEFRDKLMWGCNVAAIFVASGAVGSLIAKIKIDGSV 117
RAKTEDRDCINRLLTSCGMPKGEFRDKLMWGCNVAAIFVASGAVGSLIAKIKIDGSV
Sbjct: 61 RAKTEDRDCINRLLTSCGMPKGEFRDKLMWGCNVAAIFVASGAVGSLIAKIKIDGSV 117
>Os07g0110800 Conserved hypothetical protein
Length = 117
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/84 (72%), Positives = 70/84 (83%), Gaps = 2/84 (2%)
Query: 33 GKVKRIERFDEFEEMVQREIVEDVEKVERAKTEDRDCINRLLTSCGMPKGEFRDKLMWGC 92
G+VK I RFDEFE M QREIVEDVE+V + K+EDR+ +NRLLTS G+P GEFRDKLMWG
Sbjct: 35 GEVKSIRRFDEFEAMAQREIVEDVEEVRKLKSEDRNYLNRLLTSWGVPNGEFRDKLMWGG 94
Query: 93 NVAAIFVASGAVGSLIAKIKIDGS 116
NVAAIF+AS AVG+L A KIDGS
Sbjct: 95 NVAAIFIASSAVGTLSA--KIDGS 116
>Os07g0109800 Conserved hypothetical protein
Length = 127
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%)
Query: 38 IERFDEFEEMVQREIVEDVEKVERAKTEDRDCINRLLTSCGMPKGEFRDKLMWGCNVAAI 97
+ DE + V+RE++EDVEKV+R + EDR+ ++RLLT CGMP+G FRD L++GCNV A+
Sbjct: 40 VREIDELKAKVKREMIEDVEKVKRVENEDRNVLSRLLTFCGMPRGVFRDNLVFGCNVVAV 99
Query: 98 FVASGAVGSLIA 109
FVASG VG+ A
Sbjct: 100 FVASGVVGACSA 111
>Os03g0583300
Length = 121
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 52/68 (76%)
Query: 38 IERFDEFEEMVQREIVEDVEKVERAKTEDRDCINRLLTSCGMPKGEFRDKLMWGCNVAAI 97
++ DE + ++ I+EDVEKV+R + EDR+ +NRLLTSCGMP+G FRDKL++GC+V +
Sbjct: 33 LKELDELKTKTKKAIIEDVEKVKRLENEDRNALNRLLTSCGMPRGAFRDKLVFGCHVVEL 92
Query: 98 FVASGAVG 105
F A AVG
Sbjct: 93 FAAFSAVG 100
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,857,833
Number of extensions: 89572
Number of successful extensions: 344
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 4
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)