Os07g0110800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0110800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.87 | 0.269 | 10.3 | -0.158 | 0.0455 | -0.441 | 0.588 | 1.9 | -0.278 | 15.7 | 24.84 | 3856 | -- | -- |
| 33.38 | 0.269 | 10.4 | -0.555 | 0.0565 | -0.271 | 0.5 | -- | -0.289 | 15.4 | 22.2 | 8116 | -- | -- |
| 33.75 | 0.271 | 10.3 | -0.163 | 0.0663 | -0.461 | -- | 2.02 | -0.326 | 13 | 26.44 | 4103 | -- | -- |
| 34.1 | 0.272 | 10.4 | -0.558 | 0.0678 | -0.264 | -- | -- | -0.293 | 12.8 | 22.6 | 8098 | -- | -- |
| 33.91 | 0.271 | 10.3 | -0.0734 | -- | -0.541 | -- | 2.53 | -0.301 | -- | 26.5 | 3913 | -- | -- |
| 35.81 | 0.281 | 10.4 | -0.69 | 0.0728 | -- | 0.547 | -- | -0.391 | 15.3 | -- | -- | -- | -- |
| 36.57 | 0.283 | 10.4 | -0.68 | 0.0895 | -- | -- | -- | -0.388 | 12.8 | -- | -- | -- | -- |
| 34.38 | 0.273 | 10.4 | -0.56 | -- | -0.272 | -- | -- | -0.289 | -- | 22.79 | 8163 | -- | -- |
| 37.91 | 0.287 | 10.3 | -- | 0.0688 | -0.598 | -- | -- | -0.146 | 11.2 | 13.12 | 21261 | -- | -- |
| 37.07 | 0.285 | 10.4 | -0.683 | -- | -- | -- | -- | -0.389 | -- | -- | -- | -- | -- |
| 48.76 | 0.327 | 10.4 | -- | 0.101 | -- | -- | -- | -0.312 | 13.1 | -- | -- | -- | -- |
| 38.17 | 0.288 | 10.3 | -- | -- | -0.579 | -- | -- | -0.15 | -- | 13.16 | 22548 | -- | -- |
| 49.38 | 0.328 | 10.4 | -- | -- | -- | -- | -- | -0.314 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.72 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 4 | 31.80 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 5 | 31.81 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 15 | 31.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 7 |
| 38 | 31.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 79 | 32.00 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 159 | 32.03 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 162 | 32.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 166 | 32.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 186 | 32.07 | radiation | 40 | 43200 | > th | dose independent | sin | 9 | NA |
| 308 | 32.11 | radiation | 30 | 43200 | > th | dose dependent | sin | 8 | NA |
| 332 | 32.12 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 404 | 32.15 | radiation | 40 | 43200 | < th | dose independent | sin | 7 | NA |
| 436 | 32.16 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 6 |
| 535 | 32.18 | temperature | 15 | 270 | > th | dose dependent | sin | 11 | NA |
| 665 | 32.21 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 23 |
| 834 | 32.23 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |
| 838 | 32.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 4 |