BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0108800 Os07g0108800|AK109604
(349 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0108800 Similar to Calcium-activated outward-rectifyin... 614 e-176
Os03g0752300 Similar to K+ channel protein 349 2e-96
Os01g0696100 K+ channel, two pore family protein 152 3e-37
Os09g0299400 K+ channel, two pore family protein 128 5e-30
>Os07g0108800 Similar to Calcium-activated outward-rectifying potassium channel 1
(AtKCO1)
Length = 349
Score = 614 bits (1583), Expect = e-176, Method: Compositional matrix adjust.
Identities = 306/349 (87%), Positives = 306/349 (87%)
Query: 1 MAALDQQPLLHDGGDQKPPPEGAARRFRRCRTAPSSEPPPTDKDNSSAADAPPKTLFTGG 60
MAALDQQPLLHDGGDQKPPPEGAARRFRRCRTAPSSEPPPTDKDNSSAADAPPKTLFTGG
Sbjct: 1 MAALDQQPLLHDGGDQKPPPEGAARRFRRCRTAPSSEPPPTDKDNSSAADAPPKTLFTGG 60
Query: 61 GRPSFRXXXXXXXXXXXXXTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPA 120
GRPSFR TIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPA
Sbjct: 61 GRPSFRLVGLLLVAYLLLGTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPA 120
Query: 121 SDAAKLLXXXXXXXXXXXXXTFLSKAADYLVEKQEALLFRALHSHTMVRAMEMNKVRYKL 180
SDAAKLL TFLSKAADYLVEKQEALLFRALHSHTMVRAMEMNKVRYKL
Sbjct: 121 SDAAKLLACAFVFAGVAVVGTFLSKAADYLVEKQEALLFRALHSHTMVRAMEMNKVRYKL 180
Query: 181 YXXXXXXXXXXXXXXXXXWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWI 240
Y WKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWI
Sbjct: 181 YTAGLLLVAAVASGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAFAVAWI 240
Query: 241 TVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYK 300
TVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYK
Sbjct: 241 TVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAADFVLYK 300
Query: 301 LKELGKISQEDISEFLDEFDNLDADHSGTLSPADLAAAQPTPDPPPSLR 349
LKELGKISQEDISEFLDEFDNLDADHSGTLSPADLAAAQPTPDPPPSLR
Sbjct: 301 LKELGKISQEDISEFLDEFDNLDADHSGTLSPADLAAAQPTPDPPPSLR 349
>Os03g0752300 Similar to K+ channel protein
Length = 347
Score = 349 bits (895), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 187/344 (54%), Positives = 226/344 (65%), Gaps = 16/344 (4%)
Query: 6 QQPLLHDGGD--QKPPPEGAARRFRRCRTAPSSEP--PPTDKDNSSAADAPPKTLFTGGG 61
QQ LL D + Q+ P EG RFRRCR+ PS++P P +K +S A K +
Sbjct: 7 QQSLLADNPNVLQRKPSEGV-NRFRRCRSTPSTDPLQGPPEKGSSVKAKELFKEM----- 60
Query: 62 RPSFRXXXXXXXXXXXXXTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPAS 121
RPSFR +AFY MD +SG RT R LDALYFCVVTMTTVGYGDLVP +
Sbjct: 61 RPSFRLVGLLLFIYLLVGVLAFYAVMDEISGKRTNRVLDALYFCVVTMTTVGYGDLVPNN 120
Query: 122 DAAKLLXXXXXXXXXXXXXTFLSKAADYLVEKQEALLFRALHSH------TMVRAMEMNK 175
D KLL F+SK ADYLVEKQE L F+ALH++ M+RA+E N+
Sbjct: 121 DTTKLLACAFVFMGMAVVALFVSKVADYLVEKQEVLFFKALHTNLKGGETKMLRAIETNR 180
Query: 176 VRYKLYXXXXXXXXXXXXXXXXXWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRAF 235
++YK Y WKVE + VD+FYCVCAT+TTLGYGD+SFSS+ GR F
Sbjct: 181 IKYKFYTNALLLVLSIISGTVFLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLGRVF 240
Query: 236 AVAWITVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAAD 295
AV WI ST+++A FF+Y AE+YTERRQ+ LA WVL R+ T MDLEAADLD D +VGAA+
Sbjct: 241 AVFWIITSTIIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQVGAAE 300
Query: 296 FVLYKLKELGKISQEDISEFLDEFDNLDADHSGTLSPADLAAAQ 339
FV+YKLKELGKI+QE+IS FL+EF+ LD DHSGTLSP DL AQ
Sbjct: 301 FVVYKLKELGKINQEEISSFLEEFEKLDVDHSGTLSPYDLTLAQ 344
>Os01g0696100 K+ channel, two pore family protein
Length = 384
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 158/341 (46%), Gaps = 27/341 (7%)
Query: 10 LHDGGDQKPPPEGAARRFRRCRTAPS-----SEPPPTDKDNSSAADAPPKTLFTGGGRPS 64
LH G+ A+ F+R ++PS E P D+ N + A PS
Sbjct: 52 LHTSGNGNIV---TAQNFQRVHSSPSMFTSIKETPCADEFNEQSHAAQHV--------PS 100
Query: 65 F-RXXXXXXXXXXXXXTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDA 123
F R + + ++ G T + +D LYF ++++ T+GYGD+VP +
Sbjct: 101 FARQAIVSVILYISIGVLVYITNVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTF 160
Query: 124 AKLLXXXXXXXXXXXXXTFLSKAADYLVEKQEALLFRALHSHTMVRAMEMNKV------- 176
K+ L++ +++KQ +L + + + R + +
Sbjct: 161 TKVFTCLFLLIGVRFVDIVLNELLTNVLDKQRTVLLSTMDDNKLNRVFDTYMIDAEKKRS 220
Query: 177 --RYKLYXXXXXXXXXXXXXXXXXWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRA 234
R K+ +VEG+ +D+FY +VTT+GYGD FS+ GR
Sbjct: 221 RGRMKVLLALGVVVGTISICTIIVHEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRL 280
Query: 235 FAVAWITVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAA 294
A + VST+ VA FL+ +L +RR R+ +W+L+++ N L AADLD D V +
Sbjct: 281 SATVCLLVSTLAVAKAFLFLTDLRMDRRNRKTTKWILQKKMDNEPL-AADLDHDASVSKS 339
Query: 295 DFVLYKLKELGKISQEDISEFLDEFDNLDADHSGTLSPADL 335
DF++YKLKE+GKI +DI+ D+FD L G ++ AD+
Sbjct: 340 DFLIYKLKEIGKIDDKDIAMISDQFDQLGLAKCGKITLADI 380
>Os09g0299400 K+ channel, two pore family protein
Length = 413
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 103/202 (50%), Gaps = 10/202 (4%)
Query: 100 DALYFCVVTMTTVGYGDLVPASDAAKLLXXXXXXXXXXXXXTFLSKAADYLVEKQEALLF 159
DALYFC+VT+ T+GYGD+ PA+ AAKL LS Y+++ QE LL
Sbjct: 192 DALYFCIVTLCTIGYGDITPATPAAKLFSISFVLIGFGFVDILLSGMVSYVLDLQEHLLI 251
Query: 160 RALHSHTMVRAMEMN----------KVRYKLYXXXXXXXXXXXXXXXXXWKVEGMRAVDA 209
AL + VR N +VR K+ +VE + +DA
Sbjct: 252 TALKNPRSVRKHRHNYIFDLKKGRMRVRMKVALALTVVAICVGVGAAVLKRVENLGWLDA 311
Query: 210 FYCVCATVTTLGYGDRSFSSEGGRAFAVAWITVSTVVVALFFLYAAELYTERRQRELARW 269
Y +VTT+GYGD +F + GR FA AW+ VST+ VA FLY AE+ ++R R +A W
Sbjct: 312 VYLAVMSVTTVGYGDHAFRTLAGRLFASAWLLVSTLAVARAFLYLAEMRIDKRHRAMANW 371
Query: 270 VLRRRTTNMDLEAADLDGDHRV 291
VL R T + AAD+D + V
Sbjct: 372 VLSRDMTVSEFLAADIDNNGYV 393
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,013,286
Number of extensions: 505919
Number of successful extensions: 3476
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3459
Number of HSP's successfully gapped: 4
Length of query: 349
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 247
Effective length of database: 11,709,973
Effective search space: 2892363331
Effective search space used: 2892363331
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)