Os01g0696100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : K+ channel, two pore family protein.
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Os01g0696100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : K+ channel, two pore family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 265.8 | 0.766 | 9.09 | -1.13 | 1.21 | 1.72 | -0.712 | -2.27 | -0.985 | 17 | 10.01 | 1442 | -- | -- |
| 274.43 | 0.772 | 9.08 | -0.824 | 1.22 | 1.79 | -0.803 | -- | -0.922 | 17.3 | 10.19 | 1471 | -- | -- |
| 267.08 | 0.761 | 9.09 | -1.13 | 1.2 | 1.72 | -- | -2.24 | -0.985 | 17 | 10.01 | 1442 | -- | -- |
| 274.9 | 0.772 | 9.08 | -0.822 | 1.23 | 1.8 | -- | -- | -0.928 | 17.2 | 10 | 1468 | -- | -- |
| 338.25 | 0.857 | 9.05 | -0.91 | -- | 1.35 | -- | -2.02 | -0.87 | -- | 11.19 | 1663 | -- | -- |
| 354.09 | 0.882 | 8.91 | -0.242 | 1.18 | -- | -0.938 | -- | -0.34 | 17.1 | -- | -- | -- | -- |
| 356.31 | 0.884 | 8.92 | -0.243 | 1.17 | -- | -- | -- | -0.345 | 17.1 | -- | -- | -- | -- |
| 297.68 | 0.804 | 9.01 | -0.724 | -- | 2.59 | -- | -- | -0.841 | -- | 10 | 2088 | -- | -- |
| 283.17 | 0.784 | 9.08 | -- | 1.12 | 2.29 | -- | -- | -0.751 | 17.7 | 2.149 | 1482 | -- | -- |
| 428.53 | 0.967 | 8.9 | -0.285 | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
| 357.87 | 0.885 | 8.91 | -- | 1.18 | -- | -- | -- | -0.318 | 17.1 | -- | -- | -- | -- |
| 300.45 | 0.807 | 9.02 | -- | -- | 2.31 | -- | -- | -0.676 | -- | 2.529 | 2105 | -- | -- |
| 430.67 | 0.969 | 8.9 | -- | -- | -- | -- | -- | -0.343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 10 | 255.43 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 29 | 256.56 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 146 | 261.20 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 169 | 262.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 212 | 263.42 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 246 | 264.21 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 248 | 264.51 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 317 | 265.85 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 448 | 266.68 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 557 | 268.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 642 | 270.25 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 685 | 270.79 | radiation | 1 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 723 | 271.47 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 802 | 272.43 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 843 | 272.76 | radiation | 1 | 1440 | > th | dose dependent | sin | 16 | NA |
| 915 | 273.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 973 | 273.70 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |