BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0696100 Os01g0696100|Os01g0696100
(384 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0696100 K+ channel, two pore family protein 791 0.0
Os09g0299400 K+ channel, two pore family protein 198 6e-51
Os07g0108800 Similar to Calcium-activated outward-rectifyin... 178 7e-45
Os03g0752300 Similar to K+ channel protein 152 4e-37
>Os01g0696100 K+ channel, two pore family protein
Length = 384
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MEEHLLPVVHRDQVYSSRQDRRKSSDVPNRFVTSFHPSTNSKGNPNTPNHPLHTSGNGNI 60
MEEHLLPVVHRDQVYSSRQDRRKSSDVPNRFVTSFHPSTNSKGNPNTPNHPLHTSGNGNI
Sbjct: 1 MEEHLLPVVHRDQVYSSRQDRRKSSDVPNRFVTSFHPSTNSKGNPNTPNHPLHTSGNGNI 60
Query: 61 VTAQNFQRVHSSPSMFTSIKETPCADEFNEQSHAAQHVPSFARQAIVSVILYISIGVLVY 120
VTAQNFQRVHSSPSMFTSIKETPCADEFNEQSHAAQHVPSFARQAIVSVILYISIGVLVY
Sbjct: 61 VTAQNFQRVHSSPSMFTSIKETPCADEFNEQSHAAQHVPSFARQAIVSVILYISIGVLVY 120
Query: 121 ITNVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTFTKVFTCLFLLIGVRFVDIVL 180
ITNVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTFTKVFTCLFLLIGVRFVDIVL
Sbjct: 121 ITNVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTFTKVFTCLFLLIGVRFVDIVL 180
Query: 181 NELLTNVLDKQRTVLLSTMDDNKLNRVFDTYMIDAEKKRSRGRMKVLLALGVVVGTISIC 240
NELLTNVLDKQRTVLLSTMDDNKLNRVFDTYMIDAEKKRSRGRMKVLLALGVVVGTISIC
Sbjct: 181 NELLTNVLDKQRTVLLSTMDDNKLNRVFDTYMIDAEKKRSRGRMKVLLALGVVVGTISIC 240
Query: 241 TIIVHEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRLSATVCLLVSTLAVAKAFLFL 300
TIIVHEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRLSATVCLLVSTLAVAKAFLFL
Sbjct: 241 TIIVHEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRLSATVCLLVSTLAVAKAFLFL 300
Query: 301 TDLRMDRRNRKTTKWILQKKMDNEPLAADLDHDASVSKSDFLIYKLKEIGKIDDKDIAMI 360
TDLRMDRRNRKTTKWILQKKMDNEPLAADLDHDASVSKSDFLIYKLKEIGKIDDKDIAMI
Sbjct: 301 TDLRMDRRNRKTTKWILQKKMDNEPLAADLDHDASVSKSDFLIYKLKEIGKIDDKDIAMI 360
Query: 361 SDQFDQLGLAKCGKITLADIIGKL 384
SDQFDQLGLAKCGKITLADIIGKL
Sbjct: 361 SDQFDQLGLAKCGKITLADIIGKL 384
>Os09g0299400 K+ channel, two pore family protein
Length = 413
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 157/239 (65%), Gaps = 4/239 (1%)
Query: 104 QAIVSVILYISIGVLVYITNVEGFKGRS--TLKLVDGLYFTIISLCTIGYGDIVPCTTFT 161
A + ++ Y+++GV Y F + T + D LYF I++LCTIGYGDI P T
Sbjct: 157 HAFLFLLAYLAMGVTFYAALPGNFTSSAGPTHPVADALYFCIVTLCTIGYGDITPATPAA 216
Query: 162 KVFTCLFLLIGVRFVDIVLNELLTNVLDKQRTVLLSTMDDNK-LNRVFDTYMIDAEKKRS 220
K+F+ F+LIG FVDI+L+ +++ VLD Q +L++ + + + + + Y+ D +K R
Sbjct: 217 KLFSISFVLIGFGFVDILLSGMVSYVLDLQEHLLITALKNPRSVRKHRHNYIFDLKKGRM 276
Query: 221 RGRMKVLLALGVVVGTISICTIIVHEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRL 280
R RMKV LAL VV + + ++ VE L W+D+ YL+V+SVTTVGYGD+ F T AGRL
Sbjct: 277 RVRMKVALALTVVAICVGVGAAVLKRVENLGWLDAVYLAVMSVTTVGYGDHAFRTLAGRL 336
Query: 281 SATVCLLVSTLAVAKAFLFLTDLRMDRRNRKTTKWILQKKMD-NEPLAADLDHDASVSK 338
A+ LLVSTLAVA+AFL+L ++R+D+R+R W+L + M +E LAAD+D++ V+K
Sbjct: 337 FASAWLLVSTLAVARAFLYLAEMRIDKRHRAMANWVLSRDMTVSEFLAADIDNNGYVTK 395
>Os07g0108800 Similar to Calcium-activated outward-rectifying potassium channel 1
(AtKCO1)
Length = 349
Score = 178 bits (451), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 181/341 (53%), Gaps = 27/341 (7%)
Query: 52 LHTSGNGNIV---TAQNFQRVHSSPSMFTSIKETPCADEFNEQSHAAQHV--------PS 100
LH G+ A+ F+R ++PS E P D+ N + A PS
Sbjct: 10 LHDGGDQKPPPEGAARRFRRCRTAPS-----SEPPPTDKDNSSAADAPPKTLFTGGGRPS 64
Query: 101 FARQAIVSVILYISIGVLVYITNVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTF 160
F R + ++ Y+ +G + + ++ G T + +D LYF ++++ T+GYGD+VP +
Sbjct: 65 F-RLVGLLLVAYLLLGTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDA 123
Query: 161 TKVFTCLFLLIGVRFVDIVLNELLTNVLDKQRTVLLSTMDDNKLNRVFDTYMIDAEKKRS 220
K+ C F+ GV V L++ +++KQ +L + + + R + +
Sbjct: 124 AKLLACAFVFAGVAVVGTFLSKAADYLVEKQEALLFRALHSHTMVRAMEMNKV------- 176
Query: 221 RGRMKVLLALGVVVGTISICTIIVHEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRL 280
R K+ A ++V ++ T+++ +VEG+ +D+FY +VTT+GYGD FS+ GR
Sbjct: 177 --RYKLYTAGLLLVAAVASGTVVLWKVEGMRAVDAFYCVCATVTTLGYGDRSFSSEGGRA 234
Query: 281 SATVCLLVSTLAVAKAFLFLTDLRMDRRNRKTTKWILQKKMDNEPL-AADLDHDASVSKS 339
A + VST+ VA FL+ +L +RR R+ +W+L+++ N L AADLD D V +
Sbjct: 235 FAVAWITVSTVVVALFFLYAAELYTERRQRELARWVLRRRTTNMDLEAADLDGDHRVGAA 294
Query: 340 DFLIYKLKEIGKIDDKDIAMISDQFDQLGLAKCGKITLADI 380
DF++YKLKE+GKI +DI+ D+FD L G ++ AD+
Sbjct: 295 DFVLYKLKELGKISQEDISEFLDEFDNLDADHSGTLSPADL 335
>Os03g0752300 Similar to K+ channel protein
Length = 347
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 180/320 (56%), Gaps = 13/320 (4%)
Query: 66 FQRVHSSPSMFTSIKETPCADEFNEQSHAAQHVPSFARQAIVSVILYISIGVLVYITNVE 125
F+R S+PS + + PSF R + + +Y+ +GVL + ++
Sbjct: 29 FRRCRSTPSTDPLQGPPEKGSSVKAKELFKEMRPSF-RLVGLLLFIYLLVGVLAFYAVMD 87
Query: 126 GFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTFTKVFTCLFLLIGVRFVDIVLNELLT 185
G+ T +++D LYF ++++ T+GYGD+VP TK+ C F+ +G+ V + ++++
Sbjct: 88 EISGKRTNRVLDALYFCVVTMTTVGYGDLVPNNDTTKLLACAFVFMGMAVVALFVSKVAD 147
Query: 186 NVLDKQRTVLLSTMDDNKLNRVFDTYMIDA-EKKRSRGRM---KVLLALGVVVGTISICT 241
+++KQ + + N + +T M+ A E R + + +LL L ++ GT+
Sbjct: 148 YLVEKQEVLFFKALHTNL--KGGETKMLRAIETNRIKYKFYTNALLLVLSIISGTV---- 201
Query: 242 IIVHEVEGLNWIDSFYLSVISVTTVGYGDYGFSTPAGRLSATVCLLVSTLAVAKAFLFLT 301
+ +VE L+ +DSFY ++TT+GYGD FS+ GR+ A ++ ST+ +A+ F++L
Sbjct: 202 -FLWKVEKLSLVDSFYCVCATITTLGYGDKSFSSKLGRVFAVFWIITSTIIMAQFFMYLA 260
Query: 302 DLRMDRRNRKTTKWILQKKMDN-EPLAADLDHDASVSKSDFLIYKLKEIGKIDDKDIAMI 360
++ +RR + W+L +KM + AADLD D V ++F++YKLKE+GKI+ ++I+
Sbjct: 261 EIYTERRQKMLANWVLTRKMTKMDLEAADLDDDRQVGAAEFVVYKLKELGKINQEEISSF 320
Query: 361 SDQFDQLGLAKCGKITLADI 380
++F++L + G ++ D+
Sbjct: 321 LEEFEKLDVDHSGTLSPYDL 340
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,077,597
Number of extensions: 483110
Number of successful extensions: 1229
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1215
Number of HSP's successfully gapped: 4
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)