BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0101500 Os07g0101500|AK071749
(268 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0101500 Similar to Sterol 4-alpha-methyl-oxidase (Frag... 523 e-149
Os11g0707600 Similar to Sterol 4-alpha-methyl-oxidase (Frag... 459 e-130
AK108102 189 2e-48
Os10g0545200 Similar to 4,4-dimethyl-sterol C4-methyl-oxida... 183 1e-46
Os03g0108500 Similar to 4,4-dimethyl-sterol C4-methyl-oxida... 171 7e-43
>Os07g0101500 Similar to Sterol 4-alpha-methyl-oxidase (Fragment)
Length = 268
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 256/268 (95%), Positives = 256/268 (95%)
Query: 1 MMAAAGLESAWEYLITHFSEFQLASIGTFLLHESVFFLSGLPSLLFERLGLFSKYKIQKK 60
MMAAAGLESAWEYLITHFSEFQLASIGTFLLHESVFFLSGLPSLLFERLGLFSKYKIQKK
Sbjct: 1 MMAAAGLESAWEYLITHFSEFQLASIGTFLLHESVFFLSGLPSLLFERLGLFSKYKIQKK 60
Query: 61 SNTPDYQNRCVVRLVLYHVCVNLPLTILSYRTFKFMGLRSTLPLPHWTXXXXXXXXXXXX 120
SNTPDYQNRCVVRLVLYHVCVNLPLTILSYRTFKFMGLRSTLPLPHWT
Sbjct: 61 SNTPDYQNRCVVRLVLYHVCVNLPLTILSYRTFKFMGLRSTLPLPHWTVVVSQVLFFFVL 120
Query: 121 EDFIFYWGHRALHTKWLYQHVHSVHHEYATPFGLTSEYAHPAEILFLGFATVAGPALTGP 180
EDFIFYWGHRALHTKWLYQHVHSVHHEYATPFGLTSEYAHPAEILFLGFATVAGPALTGP
Sbjct: 121 EDFIFYWGHRALHTKWLYQHVHSVHHEYATPFGLTSEYAHPAEILFLGFATVAGPALTGP 180
Query: 181 HLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTF 240
HLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTF
Sbjct: 181 HLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTF 240
Query: 241 IYMDWLFGTDKDYRKTKALEEKERTKHL 268
IYMDWLFGTDKDYRKTKALEEKERTKHL
Sbjct: 241 IYMDWLFGTDKDYRKTKALEEKERTKHL 268
>Os11g0707600 Similar to Sterol 4-alpha-methyl-oxidase (Fragment)
Length = 266
Score = 459 bits (1181), Expect = e-130, Method: Compositional matrix adjust.
Identities = 218/267 (81%), Positives = 239/267 (89%), Gaps = 1/267 (0%)
Query: 2 MAAAGLESAWEYLITHFSEFQLASIGTFLLHESVFFLSGLPSLLFERLGLFSKYKIQKKS 61
MAA+ L+SAWE L F+EFQLA++ TFLLHE+VFFLSGLPSLLFER GLF+KYKIQKKS
Sbjct: 1 MAASALDSAWEGLTGSFTEFQLATVVTFLLHETVFFLSGLPSLLFERFGLFAKYKIQKKS 60
Query: 62 NTPDYQNRCVVRLVLYHVCVNLPLTILSYRTFKFMGLRSTLPLPHWTXXXXXXXXXXXXE 121
NTP YQNRCV+RL+LYHVCVNLP+ +LSY FKFMGLRS+LPLPHWT E
Sbjct: 61 NTPSYQNRCVLRLILYHVCVNLPVMVLSYPAFKFMGLRSSLPLPHWTVIVSQVLFYFVLE 120
Query: 122 DFIFYWGHRALHTKWLYQHVHSVHHEYATPFGLTSEYAHPAEILFLGFATVAGPALTGPH 181
DFIFYWGHRALHTKWLY+HVHSVHHEYATPFGLTSEYAHPAEILFLGFAT+ GPALTGPH
Sbjct: 121 DFIFYWGHRALHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIVGPALTGPH 180
Query: 182 LFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTFI 241
LFTLW+WMVLRVLETVEAHSGYHFPWSPSNFLPLYGG++FHDYHHRVLYTKSGNY+STF+
Sbjct: 181 LFTLWLWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFV 240
Query: 242 YMDWLFGTDKDYRKTKALEEKERTKHL 268
YMDWLFGTDKDYR KA+EEK+ KHL
Sbjct: 241 YMDWLFGTDKDYRNAKAIEEKD-GKHL 266
>AK108102
Length = 317
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 154/270 (57%), Gaps = 11/270 (4%)
Query: 7 LESAWEYLITHFSEFQLAS-IGTFLLHESVFFLSGLPSLLFERLGLFSKYKIQK-KSNTP 64
E AW ++ LA+ I +F+LHE V+F +P ++ + + KYK+Q K TP
Sbjct: 39 FEKAWANWYLYWGNPVLATGIMSFMLHEVVYFGRAIPWIIIDAMPSMRKYKLQDDKVPTP 98
Query: 65 DYQNRCVVRLVLYHVCVNLPLTILSYRTFKFMGLRS-TLPLPHWTXXXXXXXXXXXXEDF 123
+ Q +C ++L H V LP + ++ GL + +P PHWT ED
Sbjct: 99 EQQWKCTKYVLLSHFTVELPQIWSFHPICEYFGLATHEVPFPHWTKIAWQIGLFFLFEDA 158
Query: 124 IFYWGHRALHTKWLYQHVHSVHHEYATPFGLTSEYAHPAEILFLGFATVAGPAL-----T 178
YW HRALH LY+H+H HHEY+ PFGL +EYAHP E+L LG T+ GP +
Sbjct: 159 FHYWAHRALHWGPLYKHIHKKHHEYSAPFGLAAEYAHPLEVLILGMGTIGGPFMLCAFTK 218
Query: 179 GPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSS 238
H+ T+++W+VLR+ + ++AHSGY FP S N++P + GA+ HDYHH+ G YS+
Sbjct: 219 DMHILTVYIWIVLRLFQAIDAHSGYDFPISMHNWIPFWAGADHHDYHHQAFV---GCYST 275
Query: 239 TFIYMDWLFGTDKDYRKTKALEEKERTKHL 268
+F + D GTD Y++ +A + +++ + L
Sbjct: 276 SFRWWDSFMGTDLSYKRARARQAEKKRQAL 305
>Os10g0545200 Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment)
Length = 301
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 132/234 (56%), Gaps = 3/234 (1%)
Query: 35 VFFLSGLPSLLFE--RLGLFSKYKIQKKSNTPDYQN-RCVVRLVLYHVCVNLPLTILSYR 91
VF L+ LP L E +K+Q K + RC ++ V PL ++SY
Sbjct: 48 VFTLAPLPVALLELRAPAAVGPFKLQPKVRLSREEFFRCYRDVMRLFFLVIGPLQLVSYP 107
Query: 92 TFKFMGLRSTLPLPHWTXXXXXXXXXXXXEDFIFYWGHRALHTKWLYQHVHSVHHEYATP 151
T K +G+ + LPLP ED++ YW HR LH +W Y+ +H VHHE+ P
Sbjct: 108 TVKMVGIHTGLPLPSLGEMAAQLLVYFLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFTAP 167
Query: 152 FGLTSEYAHPAEILFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGYHFPWSPSN 211
G + YAH AE+L LG + GPAL H+ T W+W+VLR +E +E HSG+ FP++ +
Sbjct: 168 IGFAAPYAHWAEVLILGIPSFVGPALAPGHMITFWLWIVLRQMEAIETHSGFDFPFNLTK 227
Query: 212 FLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDWLFGTDKDYRKTKALEEKERT 265
++P YGGAE+HDYHH V N++S F Y D+L+GTDK YR KA + K +
Sbjct: 228 YIPFYGGAEYHDYHHYVGRQSQSNFASVFTYCDYLYGTDKGYRYHKAYQAKMKA 281
>Os03g0108500 Similar to 4,4-dimethyl-sterol C4-methyl-oxidase (Fragment)
Length = 300
Score = 171 bits (432), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 108/179 (60%)
Query: 84 PLTILSYRTFKFMGLRSTLPLPHWTXXXXXXXXXXXXEDFIFYWGHRALHTKWLYQHVHS 143
P+ + S+ + +G+R+ LPLP ED++ YW HR LHT W Y H+H
Sbjct: 99 PVQLASFPAVRAVGIRTGLPLPSAGETAAQVAVYLLVEDYLGYWIHRLLHTPWAYHHIHR 158
Query: 144 VHHEYATPFGLTSEYAHPAEILFLGFATVAGPALTGPHLFTLWVWMVLRVLETVEAHSGY 203
VHHE+ P G + YAH AEIL LGF AGPA+ H+ T W+W VLR LE + HSG+
Sbjct: 159 VHHEFTAPMGYAAPYAHWAEILILGFPAFAGPAIVPCHMTTFWLWFVLRHLEAIHIHSGF 218
Query: 204 HFPWSPSNFLPLYGGAEFHDYHHRVLYTKSGNYSSTFIYMDWLFGTDKDYRKTKALEEK 262
P+ P+ ++PLYGG E+HDYHH V N+SS F + D+++GTD+ YR KA K
Sbjct: 219 KLPFDPTKYIPLYGGVEYHDYHHFVGGHSQSNFSSVFTFCDYIYGTDRGYRYHKASLSK 277
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,278,845
Number of extensions: 370680
Number of successful extensions: 792
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 7
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)