BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0731400 Os06g0731400|AK065285
(242 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0731400 Conserved hypothetical protein 374 e-104
Os08g0282000 CD9/CD37/CD63 antigen family protein 105 3e-23
Os08g0159100 CD9/CD37/CD63 antigen family protein 94 1e-19
Os04g0679900 Conserved hypothetical protein 79 2e-15
>Os06g0731400 Conserved hypothetical protein
Length = 242
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/242 (78%), Positives = 189/242 (78%)
Query: 1 MGRARRSAGGGLHCCXXXXXXXXXXXXXXXXXXXXXXXXWILSRWARXXXXXXXXXXXXX 60
MGRARRSAGGGLHCC WILSRWAR
Sbjct: 1 MGRARRSAGGGLHCCLAFLFKFLAFLQAFAAVSALLYAAWILSRWARHHHLHLQDLLPDL 60
Query: 61 WFVCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTIXXXXXXXXXXXXXXXXFFNKHWI 120
WFVCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTI FFNKHWI
Sbjct: 61 WFVCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTILAVVMMLLEAALAADLFFNKHWI 120
Query: 121 QDLPYDRTGELDNLLSFIQTNLDLCKWAALAIVATQALSLLLATILRSMLSTPSADYDSD 180
QDLPYDRTGELDNLLSFIQTNLDLCKWAALAIVATQALSLLLATILRSMLSTPSADYDSD
Sbjct: 121 QDLPYDRTGELDNLLSFIQTNLDLCKWAALAIVATQALSLLLATILRSMLSTPSADYDSD 180
Query: 181 EDFVVIRRPLLVAQGAPAYLPTTADTRGFHPDLWSSRMRHKYGLNSSNYTYNTLDPNAPP 240
EDFVVIRRPLLVAQGAPAYLPTTADTRGFHPDLWSSRMRHKYGLNSSNYTYNTLDPNAPP
Sbjct: 181 EDFVVIRRPLLVAQGAPAYLPTTADTRGFHPDLWSSRMRHKYGLNSSNYTYNTLDPNAPP 240
Query: 241 PQ 242
PQ
Sbjct: 241 PQ 242
>Os08g0282000 CD9/CD37/CD63 antigen family protein
Length = 284
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 15/194 (7%)
Query: 61 WFVCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTIXXXXXXXXXXXXXXXXFFNKHWI 120
WF+ + G ++ L GC+ A + C LC Y FF++ W
Sbjct: 83 WFIYLFIGVGAIIFVISLFGCIGAATRNTCCLCCYAFLVILLILVEAGAAAFIFFDESWK 142
Query: 121 QDLPYDRTGELDNLLSFIQTNLDLCKWAALAIVATQALSLLLATILRSMLSTPSADYDSD 180
+P D+T D + F++ N ++ +W AL V + L LLA ++R+M A+YDSD
Sbjct: 143 DVIPVDKTENFDVMYDFLKENWEIARWVALGSVIFEVLLFLLALVVRAM--NKPAEYDSD 200
Query: 181 EDFVV------IRRPLLVAQGAPAY-LPT-TADTRGFHPDLWSSRMRHKYGLNSSNYTYN 232
++ + IR+PL+ +Q PA +P T + R D WS RMR KYGL++S +TYN
Sbjct: 201 DEIIATSRSTSIRQPLIHSQNVPATGVPVATLEQRASRNDAWSQRMREKYGLDTSQFTYN 260
Query: 233 TLDP-----NAPPP 241
DP N PP
Sbjct: 261 PSDPSRYQQNGAPP 274
>Os08g0159100 CD9/CD37/CD63 antigen family protein
Length = 278
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 15/181 (8%)
Query: 61 WFVCALMAAGLFYCLLLLAGCVAAEINSPCFLCFYTIXXXXXXXXXXXXXXXXFFNKHWI 120
WF+ A + G+ + + GC A C L FY+ FFN W
Sbjct: 90 WFIYAFIGVGVILFITSIFGCAGAS-RGGCCLSFYSFLIILFILVELAAGGFIFFNHSWK 148
Query: 121 QDLPYDRTGELDNLLSFIQTNLDLCKWAALAIVATQALSLLLATILRSMLSTPSADYDSD 180
+P D+TG D + SF++ N + KW AL V +A+ +A I++ S ADYDSD
Sbjct: 149 DVIPVDKTGNFDMMYSFLKENWRIAKWVALGAVLFEAVLFTVALIVQ---SGNQADYDSD 205
Query: 181 EDFVV----IRRPLLVAQGAPAYLPTTADTRGFHPDLWSSRMRHKYGLNSSNYTYNTLDP 236
++++ R+PL+ Q D R D WS RMR KYG+ +T DP
Sbjct: 206 DEYIAPRSSTRQPLVNKQPVADPRVPNLDYRPIRNDAWSQRMREKYGV-------DTFDP 258
Query: 237 N 237
N
Sbjct: 259 N 259
>Os04g0679900 Conserved hypothetical protein
Length = 217
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 61 WFVCALMAAGLFYCLLLLAGCVAAEI-NSPCFLCFYTIXXXXXXXXXXXXXXXXFFNKHW 119
WF+ + G+F CLL +G +AAE NS C C Y I F N +W
Sbjct: 54 WFIYTFIGLGVFMCLLTCSGHIAAETANSHCLSC-YMIFVFIIIILEGAITTDVFLNSNW 112
Query: 120 IQDLPYDRTGELDNLLSFIQTNLDLCKWAALAIVATQALSLLLATILRSM 169
+D P D +G+ + FI++N ++C+W L++VA Q LS++L +LR++
Sbjct: 113 EEDFPDDPSGKFEEFKDFIRSNFEICEWIGLSVVAAQVLSIVLGMVLRAL 162
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.139 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,051,368
Number of extensions: 231524
Number of successful extensions: 690
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 681
Number of HSP's successfully gapped: 4
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)