Os04g0679900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0679900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.92 | 0.345 | 11.7 | 0.182 | 2.95 | -1.35 | -0.272 | 1.35 | 0.203 | 4.85 | 16.64 | 240 | -- | -- |
| 55.06 | 0.346 | 11.7 | -0.056 | 2.97 | -1.41 | -0.577 | -- | 0.141 | 4.79 | 13.7 | 233 | -- | -- |
| 54.06 | 0.342 | 11.7 | 0.211 | 2.95 | -1.35 | -- | 1.53 | 0.212 | 4.86 | 16.82 | 231 | -- | -- |
| 55.93 | 0.348 | 11.7 | -0.0382 | 2.96 | -1.43 | -- | -- | 0.14 | 4.84 | 13.58 | 243 | -- | -- |
| 315.06 | 0.827 | 11.7 | 0.908 | -- | -3.87 | -- | 4.93 | 0.528 | -- | 24.19 | 268 | -- | -- |
| 76.85 | 0.411 | 11.8 | -0.345 | 3.37 | -- | -0.356 | -- | -0.0632 | 4.79 | -- | -- | -- | -- |
| 77.18 | 0.411 | 11.8 | -0.344 | 3.37 | -- | -- | -- | -0.0614 | 4.8 | -- | -- | -- | -- |
| 331.15 | 0.848 | 11.7 | 0.345 | -- | -3.5 | -- | -- | 0.359 | -- | 24.29 | 259 | -- | -- |
| 55.96 | 0.348 | 11.7 | -- | 2.95 | -1.43 | -- | -- | 0.15 | 4.84 | 14.7 | 243 | -- | -- |
| 677.98 | 1.22 | 11.8 | -0.218 | -- | -- | -- | -- | 0.0261 | -- | -- | -- | -- | -- |
| 80.3 | 0.419 | 11.8 | -- | 3.36 | -- | -- | -- | -0.0231 | 4.8 | -- | -- | -- | -- |
| 334.22 | 0.851 | 11.7 | -- | -- | -3.45 | -- | -- | 0.317 | -- | 24.3 | 259 | -- | -- |
| 679.23 | 1.22 | 11.8 | -- | -- | -- | -- | -- | 0.0502 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 20 |
| 20 | 42.93 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 5 |
| 37 | 44.60 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 46 | 45.10 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 51 | 45.49 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 20 |
| 69 | 45.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 75 | 46.24 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 101 | 46.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 109 | 47.09 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 5 |
| 119 | 47.39 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 123 | 47.46 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 131 | 47.65 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 146 | 47.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 176 | 48.12 | humidity | 90.0 | 90 | < th | dose independent | rect. | 13 | 5 |
| 180 | 48.20 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 223 | 48.71 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 5 |
| 239 | 48.87 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 13 | 6 |
| 240 | 48.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 273 | 49.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 293 | 49.40 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 299 | 49.48 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 305 | 49.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 6 |
| 306 | 49.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 327 | 49.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 4 |
| 328 | 49.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 4 |
| 342 | 49.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 345 | 49.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 4 |
| 346 | 49.78 | wind | 1.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 350 | 49.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 20 |
| 353 | 49.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 368 | 49.92 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 388 | 50.08 | temperature | 10.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 415 | 50.22 | radiation | 1.0 | 90 | < th | dose independent | sin | 16 | NA |
| 419 | 50.25 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 420 | 50.25 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 437 | 50.33 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 16 | 6 |
| 457 | 50.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 20 |
| 468 | 50.45 | radiation | 1.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 471 | 50.48 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 479 | 50.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 481 | 50.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 490 | 50.60 | temperature | 10.0 | 90 | > th | dose dependent | sin | 21 | NA |
| 491 | 50.60 | radiation | 1.0 | 90 | < th | dose dependent | sin | 17 | NA |
| 515 | 50.71 | radiation | 10.0 | 90 | < th | dose dependent | sin | 15 | NA |
| 546 | 50.88 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 559 | 50.92 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 15 |
| 561 | 50.94 | radiation | 1.0 | 90 | > th | dose independent | sin | 17 | NA |
| 570 | 50.99 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 578 | 51.02 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 589 | 51.06 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 609 | 51.11 | humidity | 90.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 618 | 51.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 2 |
| 620 | 51.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 628 | 51.19 | radiation | 20.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 641 | 51.25 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 15 |
| 648 | 51.28 | humidity | 70.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 656 | 51.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 658 | 51.31 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 660 | 51.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 666 | 51.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 670 | 51.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 671 | 51.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 672 | 51.34 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 674 | 51.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 10 |
| 676 | 51.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 687 | 51.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 692 | 51.43 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 7 |
| 693 | 51.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 18 |
| 695 | 51.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 696 | 51.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 10 |
| 725 | 51.53 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 727 | 51.54 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 728 | 51.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 10 |
| 729 | 51.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 737 | 51.58 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 769 | 51.76 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 774 | 51.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 6 |
| 782 | 51.81 | humidity | 70.0 | 270 | > th | dose independent | rect. | 7 | 14 |
| 795 | 51.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 20 |
| 798 | 51.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 806 | 51.87 | temperature | 30.0 | 270 | < th | dose dependent | sin | 22 | NA |
| 820 | 51.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 858 | 52.06 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 867 | 52.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 868 | 52.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 869 | 52.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 870 | 52.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 889 | 52.18 | radiation | 1.0 | 270 | > th | dose independent | sin | 21 | NA |
| 891 | 52.19 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 924 | 52.30 | wind | 1.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 934 | 52.32 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 1 |
| 937 | 52.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 6 |
| 939 | 52.32 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 14 |
| 953 | 52.36 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 955 | 52.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 17 |
| 956 | 52.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 17 |
| 966 | 52.40 | radiation | 1.0 | 270 | < th | dose independent | sin | 21 | NA |
| 970 | 52.41 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 981 | 52.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 12 | 4 |
| 994 | 52.48 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 7 |