BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0679900 Os04g0679900|AK069950
(217 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G20740.1 | chr2:8935788-8937292 FORWARD LENGTH=222 200 5e-52
AT2G20230.1 | chr2:8725762-8727388 FORWARD LENGTH=271 111 2e-25
AT4G28770.2 | chr4:14212177-14213896 REVERSE LENGTH=326 102 2e-22
AT1G32400.1 | chr1:11689393-11690873 REVERSE LENGTH=281 79 2e-15
>AT2G20740.1 | chr2:8935788-8937292 FORWARD LENGTH=222
Length = 221
Score = 200 bits (508), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 126/163 (77%), Gaps = 3/163 (1%)
Query: 4 RVVRSCVQTGLKAVNSVLGLAGMAVILYALWMLRAWYRDVADLHY---RLPVPWFIYTFI 60
R+VRSC+Q+ LK VNS++G+ G+A+ILYA+W++R W + +L + PVPWFIY+F+
Sbjct: 3 RIVRSCLQSMLKLVNSLIGMVGIAMILYAVWLIRQWQEQMGNLPFADSDHPVPWFIYSFL 62
Query: 61 GLGVFMCLLTCSGHIAAETANSHCLSCYMIFVFIIIILEGAITTDVFLNSNWEEDFPDDP 120
GLG +C++TC+GHIAAET N CL YM F+ ++ ++EG + D+FLN +W++DFP+DP
Sbjct: 63 GLGAILCVVTCAGHIAAETVNGCCLYLYMGFIVLLTMVEGGVVADIFLNRDWKKDFPEDP 122
Query: 121 SGKFEEFKDFIRSNFEICEWIGLSVVAAQVLSIVLGMVLRALG 163
SG F +F FI SNF+IC+WIGLS+V Q LS+++ M+L+ALG
Sbjct: 123 SGAFHQFSKFIESNFKICKWIGLSIVCVQGLSVLIAMLLKALG 165
>AT2G20230.1 | chr2:8725762-8727388 FORWARD LENGTH=271
Length = 270
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 105/205 (51%), Gaps = 49/205 (23%)
Query: 7 RSCVQ----TGLKAVNSVLGLAGMAVILYALWMLRAWYRD-------------------- 42
R+C + LK +N V G+++I+Y++WML + R
Sbjct: 3 RNCCHVSFASTLKILNFVQAFIGVSIIIYSIWMLHEYSRHLPVDPPPSASSSSGTEIATS 62
Query: 43 -----------VADL--------------HYRLPVPWFIYTFIGLGVFMCLLTCSGHIAA 77
VA + LP PWFIY+F+ +G+ +C++T G IAA
Sbjct: 63 VSEPLKNPIDFVASIILGSNGGDHGFNLRSLDLPAPWFIYSFMAVGILVCIVTFIGFIAA 122
Query: 78 ETANSHCLSCYMIFVFIIIILEGAITTDVFLNSNWEEDFPDDPSGKFEEFKDFIRSNFEI 137
E N CL Y I ++I+LE A+ + ++ +WE+D P DP+G+ + FI N +I
Sbjct: 123 EAINGCCLCFYSILKTLLILLEAALVAYIAIDRHWEKDLPYDPTGELSSLRAFIEENIDI 182
Query: 138 CEWIGLSVVAAQVLSIVLGMVLRAL 162
C+W+G++VVA Q+LS++L MVLRA+
Sbjct: 183 CKWVGIAVVAVQLLSLLLAMVLRAM 207
>AT4G28770.2 | chr4:14212177-14213896 REVERSE LENGTH=326
Length = 325
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 77/113 (68%)
Query: 50 LPVPWFIYTFIGLGVFMCLLTCSGHIAAETANSHCLSCYMIFVFIIIILEGAITTDVFLN 109
LP PWFIY F+ +G+ +C++T G IAAE N CL Y I ++II+E A+ + ++
Sbjct: 150 LPAPWFIYCFMAIGILVCIVTIIGFIAAEAINGCCLCFYSILKTLLIIIEAALVGFIVID 209
Query: 110 SNWEEDFPDDPSGKFEEFKDFIRSNFEICEWIGLSVVAAQVLSIVLGMVLRAL 162
+WE+D P DP+G+ + FI N +IC+W+G+ VVA Q+LS++L +VLRA+
Sbjct: 210 RHWEKDLPYDPTGELNSLRAFIEENIDICKWVGIVVVAIQLLSLLLALVLRAM 262
>AT1G32400.1 | chr1:11689393-11690873 REVERSE LENGTH=281
Length = 280
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 5/176 (2%)
Query: 44 ADLHYRLPVPWFIYTFIGLGVFMCLLTCSGHIAAETANSHCLSCYMIFVFIIIILEGAIT 103
+++ LP WFIY FIG+GV + +++C G + + + CLSCY + + ++I++E
Sbjct: 70 SNIFDNLPKAWFIYLFIGIGVALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVELGFA 129
Query: 104 TDVFLNSNWEEDFPDDPSGKFEEFKDFIRSNFEICEWIGLSVVAAQVLSIVLGMVLRALG 163
+F +++W ++ P D +G F+ +F+R N++I W+ L V + L +L +++RA
Sbjct: 130 AFIFFDNSWRDELPSDRTGNFDTIYNFLRENWKIVRWVALGAVVFEALLFLLALMVRAAN 189
Query: 164 XXXXXXXXXXXXXXXXA-RLPLLRNQYQH--GINYSE--HTLPQSSDSWSLRILDK 214
R P + Q G+ + P SD WS R+ +K
Sbjct: 190 TPAEYDSDDEYLAPRQQIRQPFINRQAAPVTGVPVAPTLDQRPSRSDPWSARMREK 245
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.141 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,401,330
Number of extensions: 164770
Number of successful extensions: 471
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 470
Number of HSP's successfully gapped: 4
Length of query: 217
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 123
Effective length of database: 8,529,465
Effective search space: 1049124195
Effective search space used: 1049124195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)