BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0717100 Os06g0717100|AK071437
(419 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0717100 Senescence-associated family protein 738 0.0
Os03g0241900 Similar to Senescence-associated protein 12 288 5e-78
Os01g0723100 Senescence-associated family protein 177 1e-44
>Os06g0717100 Senescence-associated family protein
Length = 419
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/419 (88%), Positives = 369/419 (88%)
Query: 1 MASYCYYGNTXXXXXXXXXXXXXXXXXLYPTLSMADLAPVQIGXXXXXXXXXXXXXXXXV 60
MASYCYYGNT LYPTLSMADLAPVQIG V
Sbjct: 1 MASYCYYGNTSNPNPNPNPSPAPSAPPLYPTLSMADLAPVQIGPSSPSSPMSPASPATPV 60
Query: 61 DAYANAPPPSEDVLLRIPGAQLHLIDRHRSYPLAAGDLSLLRIRSGDTSLAAIALLHPIQ 120
DAYANAPPPSEDVLLRIPGAQLHLIDRHRSYPLAAGDLSLLRIRSGDTSLAAIALLHPIQ
Sbjct: 61 DAYANAPPPSEDVLLRIPGAQLHLIDRHRSYPLAAGDLSLLRIRSGDTSLAAIALLHPIQ 120
Query: 121 WPLARDVASVKLDPCHYSFSLTVPPSADDPNPGPLHYGLTLSHPDPRLDGILATYTSFSV 180
WPLARDVASVKLDPCHYSFSLTVPPSADDPNPGPLHYGLTLSHPDPRLDGILATYTSFSV
Sbjct: 121 WPLARDVASVKLDPCHYSFSLTVPPSADDPNPGPLHYGLTLSHPDPRLDGILATYTSFSV 180
Query: 181 QSVVGGEALASKVRDEVEAAAYWTAVAPNVEEYGGKVANAIATGAGHLAKGILWCSELTV 240
QSVVGGEALASKVRDEVEAAAYWTAVAPNVEEYGGKVANAIATGAGHLAKGILWCSELTV
Sbjct: 181 QSVVGGEALASKVRDEVEAAAYWTAVAPNVEEYGGKVANAIATGAGHLAKGILWCSELTV 240
Query: 241 DRLRWGNEVLKRRMQPGDADAEVSPEMLRRIKRVKMVTKMSEKVATGILSGVVKVTGYFT 300
DRLRWGNEVLKRRMQPGDADAEVSPEMLRRIKRVKMVTKMSEKVATGILSGVVKVTGYFT
Sbjct: 241 DRLRWGNEVLKRRMQPGDADAEVSPEMLRRIKRVKMVTKMSEKVATGILSGVVKVTGYFT 300
Query: 301 NSIANSKAGKKFFNLLPGEIVLASLDGFGKICDAVEVAXXXXXXXXXXXXXXXXXHKYGE 360
NSIANSKAGKKFFNLLPGEIVLASLDGFGKICDAVEVA HKYGE
Sbjct: 301 NSIANSKAGKKFFNLLPGEIVLASLDGFGKICDAVEVAGTNVLSTSSTVTTGLVSHKYGE 360
Query: 361 KAAAATNEGMDAAGHAIGTAWAVFKIRQALNPKSVLKPTSLAKSTIKAAAADYRAKQKK 419
KAAAATNEGMDAAGHAIGTAWAVFKIRQALNPKSVLKPTSLAKSTIKAAAADYRAKQKK
Sbjct: 361 KAAAATNEGMDAAGHAIGTAWAVFKIRQALNPKSVLKPTSLAKSTIKAAAADYRAKQKK 419
>Os03g0241900 Similar to Senescence-associated protein 12
Length = 482
Score = 288 bits (737), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 160/393 (40%), Positives = 223/393 (56%), Gaps = 66/393 (16%)
Query: 70 SEDVLLRIPGAQLHLIDRHRSYPLAAGDLSLLRIRSGDTSLAAIALL------------- 116
+E+ L+ +PGAQLHL+D RS L AG LS++R+R GD S+A +A L
Sbjct: 66 TEEALVAVPGAQLHLVDPDRSMDLGAGTLSVVRLRQGDHSVAVLARLVPEKRSQRRGGLF 125
Query: 117 ---------------HPIQWPLARDVASVKLDPCHYSFSLTVPPS--ADDPNPGP----- 154
P+QWPL RDVA+VKLD HY FSL VP + DD G
Sbjct: 126 GFLSGGGKAGDGAAQEPVQWPLTRDVAAVKLDTAHYFFSLHVPHTDHEDDDAEGAEAEKD 185
Query: 155 ------LHYGLTLSHPDP-----RLDGILATYTSFSVQSVVGGEALASKVRD-------- 195
L YGLT++ +LD +L YT+FSV+ V S+V D
Sbjct: 186 ADGEAALSYGLTVASKGQEAVLAQLDKVLEEYTTFSVKQVEPAAKEKSEVMDTKAVTEIT 245
Query: 196 ------------EVEAAAYWTAVAPNVEEYGGKVANAIATGAGHLAKGILWCSELTVDRL 243
E ++AA+WT +APNV++Y VA IA G+G L +GI+WC ++T + L
Sbjct: 246 PEEAVGDKKEVVEEQSAAFWTTIAPNVDDYSSSVARLIARGSGQLVRGIIWCGDITAEGL 305
Query: 244 RWGNEVLKRRMQPGDADAEVSPEMLRRIKRVKMVTKMSEKVATGILSGVVKVTGYFTNSI 303
R G V+K+ + P ++V P +RR+KR + VTKMS +VA ILSGV+KV+G+ T+++
Sbjct: 306 RCGEAVVKKSVGPSGKPSQVKPSTIRRMKRARRVTKMSNRVANSILSGVLKVSGFVTSTV 365
Query: 304 ANSKAGKKFFNLLPGEIVLASLDGFGKICDAVEVAXXXXXXXXXXXXXXXXXHKYGEKAA 363
NSK +KFF L+ GE++LASLDGFGK+ DAVEV+ H+YG++A
Sbjct: 366 LNSKPAQKFFKLMLGEVILASLDGFGKVWDAVEVSGKNVMRTSSVVTTSVVTHRYGDQAG 425
Query: 364 AATNEGMDAAGHAIGTAWAVFKIRQALNPKSVL 396
T + + A+G+A+G AWAVFKIR+AL+PK L
Sbjct: 426 QVTQDYLHASGNALGVAWAVFKIRKALDPKGNL 458
>Os01g0723100 Senescence-associated family protein
Length = 389
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 179/370 (48%), Gaps = 35/370 (9%)
Query: 71 EDVLLRIPGAQLHLIDRHRS-YPLAAGDLSLLRIRSGDTSLAAIALL-HPIQWPLARDVA 128
E+ LLR+PGA +HL+D LA GDL+++RI ++A +A + + WP+ RD
Sbjct: 19 EETLLRVPGASVHLLDGAEGPVELARGDLAVVRIAKDGVAVATVARVGRGLGWPITRDEP 78
Query: 129 SVKLDPCHYSFSL---TVPPSADDPNPGPLHYGLTLSHPD----PRLDGILATYTSFSVQ 181
V+LD HY F+L T L+YG++ + PD LD L FS
Sbjct: 79 VVRLDRLHYLFTLPDSTGGGGGGGGGALFLNYGVSFAAPDDALLASLDAFLKANACFSTP 138
Query: 182 SVVGGEALASKVRDEVEAA------AYWTAVAPNVEEYGGKVANAIATGAGHLAKGILWC 235
S ++ YW AP ++ Y +A AIA G G L +GI C
Sbjct: 139 SSPAPSRSSATTTTRPAPTTTATADGYWNDFAPRMDSYNNVLAKAIAAGTGQLVRGIFMC 198
Query: 236 SELTVDRLRWGNEVLKRR------------------MQPGDADAEVSPEMLRRIKRVKMV 277
SE +++ G ++++ + G DA+ + + +KRV+ +
Sbjct: 199 SEAYATQVQRGADLIRPQATGSVTKRSGGAGGGGASRTTGQPDAK-RGGVNKSLKRVRKL 257
Query: 278 TKMSEKVATGILSGVVKVTGYFTNSIANSKAGKKFFNLLPGEIVLASLDGFGKICDAVEV 337
++M+EK++ +L V+ VTG + SK GK F +PGE++LASLD K+ DAVE
Sbjct: 258 SEMTEKMSQSLLDTVIAVTGSMAAPLLRSKQGKAFLATVPGEVILASLDAINKVMDAVEA 317
Query: 338 AXXXXXXXXXXXXXXXXXHKYGEKAAAATNEGMDAAGHAIGTAWAVFKIRQALNPKSVLK 397
A +YGE A AT + AGHA+GTAW +FKIR+A+ P S L
Sbjct: 318 AERRSLAATSNVVSGAVSRRYGESAGEATEDAFATAGHAVGTAWNLFKIRKAVTPSSSL- 376
Query: 398 PTSLAKSTIK 407
P ++ KS ++
Sbjct: 377 PGNMVKSAVR 386
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,145,449
Number of extensions: 541864
Number of successful extensions: 1449
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 3
Length of query: 419
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 316
Effective length of database: 11,657,759
Effective search space: 3683851844
Effective search space used: 3683851844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)