Os03g0241900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Senescence-associated protein 12.
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Os03g0241900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Senescence-associated protein 12.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.04 | 0.37 | 11.6 | -1.25 | 1.02 | 0.619 | 0.848 | 0.694 | -0.383 | 12.9 | 21.85 | 822 | -- | -- |
| 63.3 | 0.371 | 11.6 | -1.43 | 1.02 | 0.586 | 0.667 | -- | -0.429 | 12.9 | 21.9 | 796 | -- | -- |
| 64.74 | 0.375 | 11.6 | -1.29 | 1.01 | 0.598 | -- | 0.398 | -0.401 | 12.9 | 21.9 | 801 | -- | -- |
| 65.21 | 0.376 | 11.6 | -1.41 | 1.02 | 0.594 | -- | -- | -0.432 | 12.9 | 21.95 | 794 | -- | -- |
| 112.03 | 0.496 | 11.6 | -1.25 | -- | 0.546 | -- | 0.505 | -0.381 | -- | 22 | 133 | -- | -- |
| 77.35 | 0.412 | 11.6 | -1.23 | 0.932 | -- | 0.715 | -- | -0.244 | 13.2 | -- | -- | -- | -- |
| 79.45 | 0.417 | 11.6 | -1.21 | 0.931 | -- | -- | -- | -0.241 | 13.2 | -- | -- | -- | -- |
| 93.54 | 0.45 | 11.6 | -1.38 | -- | 0.633 | -- | -- | -0.386 | -- | 26.3 | 8 | -- | -- |
| 113.2 | 0.496 | 11.5 | -- | 0.997 | 0.331 | -- | -- | -0.208 | 13.1 | 22.37 | 688 | -- | -- |
| 133.07 | 0.539 | 11.6 | -1.24 | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
| 117.87 | 0.508 | 11.5 | -- | 0.952 | -- | -- | -- | -0.106 | 13.3 | -- | -- | -- | -- |
| 144.7 | 0.562 | 11.6 | -- | -- | 0.532 | -- | -- | -0.24 | -- | 26.4 | 10 | -- | -- |
| 173.84 | 0.615 | 11.5 | -- | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 58.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 3 | 58.16 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 6 | 58.94 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 16 | 59.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 20 | 59.43 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 4 |
| 29 | 59.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 60 | 60.56 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 6 |
| 98 | 61.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 124 | 61.45 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 19 |
| 133 | 61.53 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 19 |
| 144 | 61.63 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 4 |
| 163 | 61.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 17 |
| 179 | 61.91 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 15 |
| 194 | 62.02 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 2 |
| 226 | 62.22 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 242 | 62.28 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 262 | 62.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 270 | 62.50 | temperature | 20 | 30 | > th | dose independent | rect. | 6 | 14 |
| 275 | 62.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 20 |
| 346 | 62.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 358 | 62.90 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 377 | 62.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 380 | 62.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 401 | 63.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 408 | 63.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 457 | 63.13 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 487 | 63.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 551 | 63.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 10 |
| 580 | 63.43 | humidity | 70 | 270 | > th | dose independent | rect. | 18 | 10 |
| 618 | 63.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 5 |
| 658 | 63.61 | temperature | 25 | 10 | > th | dose dependent | sin | 10 | NA |
| 700 | 63.71 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 11 |
| 833 | 64.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 5 |
| 915 | 64.19 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 919 | 64.20 | humidity | 80 | 270 | > th | dose independent | rect. | 5 | 2 |
| 932 | 64.22 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 19 |
| 983 | 64.32 | humidity | 80 | 270 | > th | dose independent | rect. | 4 | 4 |