BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0241900 Os03g0241900|AK111568
(482 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0241900 Similar to Senescence-associated protein 12 788 0.0
Os06g0717100 Senescence-associated family protein 291 9e-79
Os01g0723100 Senescence-associated family protein 158 8e-39
>Os03g0241900 Similar to Senescence-associated protein 12
Length = 482
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/482 (82%), Positives = 398/482 (82%)
Query: 1 MAAKQSLYPEVNQSHPDLNTAFLANPNRAATASPGGSLYPSVDPQQLAENLFXXXXXXXX 60
MAAKQSLYPEVNQSHPDLNTAFLANPNRAATASPGGSLYPSVDPQQLAENLF
Sbjct: 1 MAAKQSLYPEVNQSHPDLNTAFLANPNRAATASPGGSLYPSVDPQQLAENLFPDAADDAA 60
Query: 61 XXXXXXXXXLVAVPGAQLHLVDPDRSMDLGAGTLSVVRLRQGDHSVAVLARLVPEKRSQR 120
LVAVPGAQLHLVDPDRSMDLGAGTLSVVRLRQGDHSVAVLARLVPEKRSQR
Sbjct: 61 PPPPTTEEALVAVPGAQLHLVDPDRSMDLGAGTLSVVRLRQGDHSVAVLARLVPEKRSQR 120
Query: 121 RXXXXXXXXXXXXXXXXXXQEPVQWPLTRDVAAVKLDTAHYFFSLHVPHTDHXXXXXXXX 180
R QEPVQWPLTRDVAAVKLDTAHYFFSLHVPHTDH
Sbjct: 121 RGGLFGFLSGGGKAGDGAAQEPVQWPLTRDVAAVKLDTAHYFFSLHVPHTDHEDDDAEGA 180
Query: 181 XXXXXXXXXXXLSYGLTVASKGQEAVLAQLDKVLEEYTTFSVKQVEPAAKEKSEVMDTKA 240
LSYGLTVASKGQEAVLAQLDKVLEEYTTFSVKQVEPAAKEKSEVMDTKA
Sbjct: 181 EAEKDADGEAALSYGLTVASKGQEAVLAQLDKVLEEYTTFSVKQVEPAAKEKSEVMDTKA 240
Query: 241 VTEITPEEAVGDKKEVVEEQSAAFWTTIAPNVDDYSSSVARLIARGSGQLVRGIIWCGDI 300
VTEITPEEAVGDKKEVVEEQSAAFWTTIAPNVDDYSSSVARLIARGSGQLVRGIIWCGDI
Sbjct: 241 VTEITPEEAVGDKKEVVEEQSAAFWTTIAPNVDDYSSSVARLIARGSGQLVRGIIWCGDI 300
Query: 301 TAEGLRCGEAVVKKSVGPSGKPSQVKPSTIRRMKRARRVTKMSNRVANSILSGVLKVSGF 360
TAEGLRCGEAVVKKSVGPSGKPSQVKPSTIRRMKRARRVTKMSNRVANSILSGVLKVSGF
Sbjct: 301 TAEGLRCGEAVVKKSVGPSGKPSQVKPSTIRRMKRARRVTKMSNRVANSILSGVLKVSGF 360
Query: 361 VTSTVLNSKPAQKFFKLMLGEVILASLDGFGKVWDAVEVSGKNVMRXXXXXXXXXXXHRY 420
VTSTVLNSKPAQKFFKLMLGEVILASLDGFGKVWDAVEVSGKNVMR HRY
Sbjct: 361 VTSTVLNSKPAQKFFKLMLGEVILASLDGFGKVWDAVEVSGKNVMRTSSVVTTSVVTHRY 420
Query: 421 GDQAGQVTQDYLHASGNALGVAWAVFKIRKALDPKGNLXXXXXXXXXXXXXXXXXXXRQR 480
GDQAGQVTQDYLHASGNALGVAWAVFKIRKALDPKGNL RQR
Sbjct: 421 GDQAGQVTQDYLHASGNALGVAWAVFKIRKALDPKGNLKKSSLASAAAHAVAKESISRQR 480
Query: 481 RK 482
RK
Sbjct: 481 RK 482
>Os06g0717100 Senescence-associated family protein
Length = 419
Score = 291 bits (744), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 221/389 (56%), Gaps = 66/389 (16%)
Query: 70 LVAVPGAQLHLVDPDRSMDLGAGTLSVVRLRQGDHSVAVLARLVPEKRSQRRXXXXXXXX 129
L+ +PGAQLHL+D RS L AG LS++R+R GD S+A +A L
Sbjct: 74 LLRIPGAQLHLIDRHRSYPLAAGDLSLLRIRSGDTSLAAIALL----------------- 116
Query: 130 XXXXXXXXXXQEPVQWPLTRDVAAVKLDTAHYFFSLHVPHTDHXXXXXXXXXXXXXXXXX 189
P+QWPL RDVA+VKLD HY FSL VP +
Sbjct: 117 -----------HPIQWPLARDVASVKLDPCHYSFSLTVPPS-------------ADDPNP 152
Query: 190 XXLSYGLTVASKGQEAVLAQLDKVLEEYTTFSVKQVEPAAKEKSEVMDTKAVTEITPEEA 249
L YGLT++ +LD +L YT+FSV+ V S+V D
Sbjct: 153 GPLHYGLTLSHPDP-----RLDGILATYTSFSVQSVVGGEALASKVRD------------ 195
Query: 250 VGDKKEVVEEQSAAFWTTIAPNVDDYSSSVARLIARGSGQLVRGIIWCGDITAEGLRCGE 309
E ++AA+WT +APNV++Y VA IA G+G L +GI+WC ++T + LR G
Sbjct: 196 --------EVEAAAYWTAVAPNVEEYGGKVANAIATGAGHLAKGILWCSELTVDRLRWGN 247
Query: 310 AVVKKSVGPSGKPSQVKPSTIRRMKRARRVTKMSNRVANSILSGVLKVSGFVTSTVLNSK 369
V+K+ + P ++V P +RR+KR + VTKMS +VA ILSGV+KV+G+ T+++ NSK
Sbjct: 248 EVLKRRMQPGDADAEVSPEMLRRIKRVKMVTKMSEKVATGILSGVVKVTGYFTNSIANSK 307
Query: 370 PAQKFFKLMLGEVILASLDGFGKVWDAVEVSGKNVMRXXXXXXXXXXXHRYGDQAGQVTQ 429
+KFF L+ GE++LASLDGFGK+ DAVEV+G NV+ H+YG++A T
Sbjct: 308 AGKKFFNLLPGEIVLASLDGFGKICDAVEVAGTNVLSTSSTVTTGLVSHKYGEKAAAATN 367
Query: 430 DYLHASGNALGVAWAVFKIRKALDPKGNL 458
+ + A+G+A+G AWAVFKIR+AL+PK L
Sbjct: 368 EGMDAAGHAIGTAWAVFKIRQALNPKSVL 396
>Os01g0723100 Senescence-associated family protein
Length = 389
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 191/407 (46%), Gaps = 70/407 (17%)
Query: 70 LVAVPGAQLHLVD-PDRSMDLGAGTLSVVRLRQGDHSVAVLARLVPEKRSQRRXXXXXXX 128
L+ VPGA +HL+D + ++L G L+VVR+ + +VA +AR+
Sbjct: 22 LLRVPGASVHLLDGAEGPVELARGDLAVVRIAKDGVAVATVARV---------------- 65
Query: 129 XXXXXXXXXXXQEPVQWPLTRDVAAVKLDTAHYFFSLHVPHTDHXXXXXXXXXXXXXXXX 188
+ WP+TRD V+LD HY F+L P +
Sbjct: 66 -----------GRGLGWPITRDEPVVRLDRLHYLFTL--PDS--------TGGGGGGGGG 104
Query: 189 XXXLSYGLTVASKGQEAVLAQLDKVLEEYTTFSVKQVEPAAKEKSEVMDTKAVTEITPEE 248
L+YG++ A+ +A+LA LD L+ FS ++ + A T +
Sbjct: 105 ALFLNYGVSFAAP-DDALLASLDAFLKANACFSTPSSPAPSRSSATTTTRPAPTTTATAD 163
Query: 249 AVGDKKEVVEEQSAAFWTTIAPNVDDYSSSVARLIARGSGQLVRGIIWCGDITAEGLRCG 308
+W AP +D Y++ +A+ IA G+GQLVRGI C + A ++ G
Sbjct: 164 G--------------YWNDFAPRMDSYNNVLAKAIAAGTGQLVRGIFMCSEAYATQVQRG 209
Query: 309 EAVVK-KSVGP----------------SGKPSQVKPSTIRRMKRARRVTKMSNRVANSIL 351
+++ ++ G +G+P + + +KR R++++M+ +++ S+L
Sbjct: 210 ADLIRPQATGSVTKRSGGAGGGGASRTTGQPDAKRGGVNKSLKRVRKLSEMTEKMSQSLL 269
Query: 352 SGVLKVSGFVTSTVLNSKPAQKFFKLMLGEVILASLDGFGKVWDAVEVSGKNVMRXXXXX 411
V+ V+G + + +L SK + F + GEVILASLD KV DAVE + + +
Sbjct: 270 DTVIAVTGSMAAPLLRSKQGKAFLATVPGEVILASLDAINKVMDAVEAAERRSLAATSNV 329
Query: 412 XXXXXXHRYGDQAGQVTQDYLHASGNALGVAWAVFKIRKALDPKGNL 458
RYG+ AG+ T+D +G+A+G AW +FKIRKA+ P +L
Sbjct: 330 VSGAVSRRYGESAGEATEDAFATAGHAVGTAWNLFKIRKAVTPSSSL 376
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,694,611
Number of extensions: 433692
Number of successful extensions: 1133
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 3
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)