Os06g0717100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Senescence-associated family protein.
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Os06g0717100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Senescence-associated family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.14 | 0.245 | 11.7 | 0.781 | 0.628 | 0.177 | 0.153 | -1.43 | 0.116 | 7.1 | -0.001671 | 1472 | -- | -- |
| 31.25 | 0.26 | 11.7 | 0.966 | 0.675 | 0.16 | 0.146 | -- | 0.193 | 7.12 | 2.632 | 2165 | -- | -- |
| 27.2 | 0.243 | 11.7 | 0.784 | 0.628 | 0.178 | -- | -1.42 | 0.116 | 7.13 | -0.001799 | 1458 | -- | -- |
| 30.08 | 0.255 | 11.7 | 1.06 | 0.635 | 0.248 | -- | -- | 0.207 | 7 | -80.61 | 39173 | -- | -- |
| 48.03 | 0.323 | 11.7 | 0.81 | -- | 0.194 | -- | -1.36 | 0.122 | -- | -0.197 | 1473 | -- | -- |
| 31.79 | 0.264 | 11.7 | 0.989 | 0.628 | -- | 0.123 | -- | 0.218 | 7.19 | -- | -- | -- | -- |
| 31.83 | 0.264 | 11.7 | 0.991 | 0.628 | -- | -- | -- | 0.218 | 7.19 | -- | -- | -- | -- |
| 41.34 | 0.299 | 11.7 | 1.03 | -- | -0.559 | -- | -- | 0.284 | -- | -6.725 | 754 | -- | -- |
| 56.72 | 0.351 | 11.7 | -- | 0.636 | -0.204 | -- | -- | 0.109 | 7.11 | -57.86 | 47520 | -- | -- |
| 52.71 | 0.339 | 11.7 | 1 | -- | -- | -- | -- | 0.229 | -- | -- | -- | -- | -- |
| 57.73 | 0.355 | 11.7 | -- | 0.639 | -- | -- | -- | 0.107 | 7.09 | -- | -- | -- | -- |
| 69.37 | 0.388 | 11.7 | -- | -- | -0.521 | -- | -- | 0.165 | -- | -23.51 | 727 | -- | -- |
| 79.24 | 0.415 | 11.7 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.70 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 6 | 26.76 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 14 | 26.85 | radiation | 1 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 20 | 26.89 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 30 | 26.92 | radiation | 1 | 1440 | > th | dose dependent | sin | 6 | NA |
| 45 | 26.95 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 50 | 26.96 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 7 |
| 54 | 26.97 | radiation | 40 | 1440 | < th | dose dependent | sin | 5 | NA |
| 58 | 26.98 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 11 |
| 87 | 27.05 | radiation | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 89 | 27.05 | radiation | 30 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 106 | 27.06 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 127 | 27.09 | radiation | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 150 | 27.12 | radiation | 1 | 1440 | > th | dose dependent | sin | 11 | NA |
| 182 | 27.16 | radiation | 40 | 1440 | < th | dose dependent | sin | 11 | NA |
| 205 | 27.18 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 11 |
| 206 | 27.18 | radiation | 1 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 220 | 27.19 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 225 | 27.19 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 235 | 27.19 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 248 | 27.19 | radiation | 40 | 1440 | < th | dose dependent | rect. | 6 | 22 |
| 256 | 27.20 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 259 | 27.20 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |
| 394 | 27.20 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 423 | 27.21 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 518 | 27.26 | radiation | 30 | 1440 | < th | dose independent | no | NA | NA |
| 519 | 27.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 523 | 27.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 555 | 27.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 562 | 27.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 596 | 27.26 | radiation | 30 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 614 | 27.27 | radiation | 30 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 687 | 27.28 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 732 | 27.30 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 753 | 27.31 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 801 | 27.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 6 | 11 |