BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0715100 Os06g0715100|AK068956
         (206 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0715100  Similar to Novel plant SNARE 11 (AtNPSN11)          422   e-118
Os03g0369800  Similar to Novel plant SNARE 13 (AtNPSN13)          246   9e-66
Os07g0637400  Similar to Novel plant SNARE 12 (AtNPSN12)          240   6e-64

>Os06g0715100 Similar to Novel plant SNARE 11 (AtNPSN11)
          Length = 206

 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MDLESVNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKD 60
           MDLESVNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKD
Sbjct: 1   MDLESVNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKD 60

Query: 61  FERVVKDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASENKRVDLFDGPSVEDGF 120
           FERVVKDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASENKRVDLFDGPSVEDGF
Sbjct: 61  FERVVKDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASENKRVDLFDGPSVEDGF 120

Query: 121 GEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMS 180
           GEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMS
Sbjct: 121 GEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMS 180

Query: 181 RIVNELDSIHFSIKKASQMVKEIGCN 206
           RIVNELDSIHFSIKKASQMVKEIGCN
Sbjct: 181 RIVNELDSIHFSIKKASQMVKEIGCN 206



>Os03g0369800 Similar to Novel plant SNARE 13 (AtNPSN13)
          Length = 275

 Score =  246 bits (628), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 123/204 (60%), Positives = 159/204 (77%), Gaps = 5/204 (2%)

Query: 6   VNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKDFERVV 65
           ++PEL +IDG++ DI RALQNGFQK+DKIKD++R+++QLE+LT KM++CKRLIK+F+R++
Sbjct: 7   MSPELEQIDGEVQDIFRALQNGFQKMDKIKDSSRQAKQLEDLTAKMKECKRLIKEFDRIL 66

Query: 66  KDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASE----NKRVDLFD-GPSVEDGF 120
           KD   +  PE  + L+DRKQ MIKELNSYV L+K Y S     NKRV+LFD G    +  
Sbjct: 67  KDEESNNPPEVHKQLNDRKQYMIKELNSYVTLRKTYQSSLGNNNKRVELFDMGAGSSEPA 126

Query: 121 GEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMS 180
            E+N+ +AS MTNQQLMD G + M +TDQAI RSK  V +TI  GT+TA+AL  QTEQM 
Sbjct: 127 AEDNIQIASAMTNQQLMDAGREQMTQTDQAIDRSKMVVAQTIETGTQTASALSQQTEQMK 186

Query: 181 RIVNELDSIHFSIKKASQMVKEIG 204
           RI NELD++HFS+KKASQ+VKEIG
Sbjct: 187 RIGNELDTVHFSLKKASQLVKEIG 210



>Os07g0637400 Similar to Novel plant SNARE 12 (AtNPSN12)
          Length = 266

 Score =  240 bits (612), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 159/202 (78%), Gaps = 5/202 (2%)

Query: 6   VNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKDFERVV 65
           ++PEL ++DG+I DI RALQNGFQK+DKIKD+NR+S+QLE+LT KMR+CKRLIK+F+R++
Sbjct: 7   MSPELEQVDGEIQDIFRALQNGFQKMDKIKDSNRQSKQLEDLTGKMRECKRLIKEFDRIL 66

Query: 66  KDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASE--NKRVDLFDGPSVEDGFGEE 123
           K+       +  + L+D+KQ MIKELNSYV L+K Y S   NKR++LFD  +  D   E+
Sbjct: 67  KEDEKKNSADVNKQLNDKKQLMIKELNSYVTLRKTYQSSLGNKRIELFD--TGNDQVAED 124

Query: 124 N-VLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMSRI 182
           N V +AS M+NQQLMD G + MD+TDQ I RSK+ V +T+ VG++TAAAL  QTEQM RI
Sbjct: 125 NTVQMASEMSNQQLMDAGRKQMDQTDQVIERSKKVVAQTVEVGSQTAAALSQQTEQMKRI 184

Query: 183 VNELDSIHFSIKKASQMVKEIG 204
            NELDS+HFS+KKASQMVKEIG
Sbjct: 185 GNELDSVHFSLKKASQMVKEIG 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,634,972
Number of extensions: 202737
Number of successful extensions: 696
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 110
Effective length of database: 12,023,257
Effective search space: 1322558270
Effective search space used: 1322558270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)