Os07g0637400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Novel plant SNARE 12 (AtNPSN12).
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Os07g0637400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Novel plant SNARE 12 (AtNPSN12).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.21 | 0.55 | 8.88 | -3.18 | 0.961 | 2.32 | -0.249 | -2.33 | -0.445 | 7.16 | 21.2 | 1234 | -- | -- |
| 140.39 | 0.552 | 8.8 | -2.64 | 0.973 | 2.24 | -0.458 | -- | -0.293 | 7.16 | 20.5 | 2586 | -- | -- |
| 137.37 | 0.546 | 8.88 | -3.18 | 0.958 | 2.32 | -- | -2.31 | -0.444 | 7.14 | 21.2 | 1237 | -- | -- |
| 140.06 | 0.551 | 8.81 | -2.66 | 0.99 | 2.23 | -- | -- | -0.281 | 7.01 | 20.25 | 2577 | -- | -- |
| 182.28 | 0.629 | 8.91 | -3.22 | -- | 2.28 | -- | -2.35 | -0.426 | -- | 21.7 | 1335 | -- | -- |
| 286.37 | 0.793 | 8.7 | -1.78 | 1.04 | -- | -0.0311 | -- | 0.227 | 5.87 | -- | -- | -- | -- |
| 286.37 | 0.792 | 8.7 | -1.78 | 1.04 | -- | -- | -- | 0.227 | 5.86 | -- | -- | -- | -- |
| 186.31 | 0.636 | 8.82 | -2.54 | -- | 2.19 | -- | -- | -0.256 | -- | 20.62 | 1332 | -- | -- |
| 296.32 | 0.802 | 8.69 | -- | 1.78 | 1.98 | -- | -- | 0.172 | 6.28 | 21.73 | 531 | -- | -- |
| 342.19 | 0.864 | 8.71 | -1.75 | -- | -- | -- | -- | 0.251 | -- | -- | -- | -- | -- |
| 369.86 | 0.9 | 8.65 | -- | 1.01 | -- | -- | -- | 0.426 | 5.95 | -- | -- | -- | -- |
| 335.16 | 0.853 | 8.7 | -- | -- | 1.21 | -- | -- | 0.35 | -- | 25.93 | 1297 | -- | -- |
| 422.81 | 0.96 | 8.67 | -- | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 6 | 136.24 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 10 | 137.30 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 16 | 138.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 19 | 138.53 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 20 | 138.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 23 | 138.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 24 | 138.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 32 | 138.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 37 | 138.98 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 7 |
| 44 | 139.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 52 | 139.45 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 54 | 139.49 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 9 |
| 66 | 139.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 98 | 140.14 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 109 | 140.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 113 | 140.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 129 | 140.43 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 130 | 140.43 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 134 | 140.47 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 137 | 140.50 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 145 | 140.54 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 151 | 140.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 157 | 140.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 161 | 140.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 165 | 140.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 170 | 140.72 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |
| 172 | 140.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 183 | 140.80 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 13 |
| 195 | 140.85 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 199 | 140.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 219 | 140.98 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 245 | 141.05 | wind | 7 | 43200 | > th | dose independent | sin | 5 | NA |
| 247 | 141.07 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 272 | 141.18 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 273 | 141.18 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 288 | 141.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 308 | 141.40 | wind | 7 | 43200 | < th | dose independent | sin | 5 | NA |
| 312 | 141.41 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 318 | 141.45 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 351 | 141.65 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 376 | 141.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 380 | 141.84 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 12 |
| 383 | 141.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 432 | 142.04 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 467 | 142.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 476 | 142.15 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 539 | 142.38 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 547 | 142.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 587 | 142.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 608 | 142.77 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 615 | 142.83 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 702 | 143.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 785 | 143.47 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 7 |