Os06g0715100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Novel plant SNARE 11 (AtNPSN11).
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Os06g0715100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Novel plant SNARE 11 (AtNPSN11).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.63 | 0.424 | 9.04 | -1.61 | 1.47 | -0.184 | 0.84 | 7.58 | -0.248 | 5.82 | 30.71 | 1127 | -- | -- |
| 85.47 | 0.431 | 9.17 | -2.73 | 1.51 | 0.662 | 1.1 | -- | -0.222 | 5.49 | 32.12 | 1105 | -- | -- |
| 83.34 | 0.425 | 9.04 | -1.56 | 1.47 | -0.211 | -- | 7.83 | -0.25 | 5.81 | 30.81 | 1136 | -- | -- |
| 85.87 | 0.432 | 9.17 | -2.83 | 1.46 | 0.693 | -- | -- | -0.233 | 5.77 | 31.71 | 1146 | -- | -- |
| 193.29 | 0.648 | 9.03 | -1.36 | -- | -0.236 | -- | 8.84 | -0.19 | -- | 30.8 | 1207 | -- | -- |
| 104.32 | 0.479 | 9.21 | -2.64 | 1.51 | -- | 0.954 | -- | -0.369 | 5.56 | -- | -- | -- | -- |
| 106.57 | 0.483 | 9.21 | -2.64 | 1.52 | -- | -- | -- | -0.373 | 5.56 | -- | -- | -- | -- |
| 198.14 | 0.656 | 9.21 | -2.79 | -- | 0.756 | -- | -- | -0.206 | -- | 31.2 | 1198 | -- | -- |
| 285.31 | 0.787 | 9.13 | -- | 1.46 | 0.359 | -- | -- | -0.022 | 5.77 | 34.19 | 1023 | -- | -- |
| 225.85 | 0.702 | 9.23 | -2.59 | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
| 290.32 | 0.797 | 9.15 | -- | 1.47 | -- | -- | -- | -0.0792 | 5.64 | -- | -- | -- | -- |
| 394.64 | 0.925 | 9.15 | -- | -- | 0.413 | -- | -- | 0.026 | -- | 33.43 | 1150 | -- | -- |
| 402.94 | 0.937 | 9.17 | -- | -- | -- | -- | -- | -0.0491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 31 | 70.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 47 | 71.79 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 120 | 73.90 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 18 |
| 126 | 74.18 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 168 | 75.50 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 174 | 75.80 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 19 |
| 189 | 76.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 226 | 76.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 232 | 77.03 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 239 | 77.14 | temperature | 15.0 | 10 | > th | dose dependent | sin | 14 | NA |
| 250 | 77.27 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 254 | 77.33 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 267 | 77.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 6 |
| 268 | 77.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 277 | 77.57 | wind | 7.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 288 | 77.71 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 10 |
| 290 | 77.73 | temperature | 15.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 297 | 77.76 | temperature | 30.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 298 | 77.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 301 | 77.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 302 | 77.76 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 6 |
| 306 | 77.76 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 312 | 77.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 319 | 77.84 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 18 |
| 322 | 77.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 323 | 77.87 | temperature | 30.0 | 10 | < th | dose dependent | sin | 14 | NA |
| 332 | 77.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 334 | 77.92 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 366 | 78.08 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 20 |
| 389 | 78.32 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 9 | 15 |
| 394 | 78.37 | wind | 9.0 | 270 | < th | dose dependent | rect. | 24 | 6 |
| 395 | 78.38 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 396 | 78.39 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 404 | 78.48 | radiation | 1.0 | 270 | > th | dose independent | rect. | 11 | 8 |
| 416 | 78.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 418 | 78.50 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 462 | 78.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 17 |
| 464 | 78.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 17 |
| 478 | 78.75 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 479 | 78.76 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 498 | 78.87 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 16 |
| 519 | 78.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 18 |
| 520 | 78.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 521 | 78.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 522 | 78.99 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 529 | 79.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 9 |
| 530 | 79.04 | radiation | 1.0 | 270 | < th | dose independent | rect. | 14 | 10 |
| 532 | 79.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 9 |
| 545 | 79.10 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 608 | 79.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 609 | 79.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 7 |
| 610 | 79.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 7 |
| 619 | 79.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 7 |
| 621 | 79.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 7 |
| 625 | 79.42 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 647 | 79.47 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 673 | 79.56 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 674 | 79.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 15 |
| 676 | 79.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 678 | 79.57 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 679 | 79.57 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 680 | 79.57 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 681 | 79.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 682 | 79.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 15 |
| 703 | 79.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 711 | 79.69 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 715 | 79.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 717 | 79.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 726 | 79.79 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 750 | 79.87 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 5 |
| 767 | 79.93 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 7 |
| 768 | 79.93 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 8 |
| 782 | 80.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 9 |
| 784 | 80.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 15 |
| 785 | 80.01 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 788 | 80.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 815 | 80.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 819 | 80.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 823 | 80.12 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 825 | 80.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 834 | 80.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 852 | 80.23 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 892 | 80.30 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 933 | 80.43 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 5 |
| 934 | 80.43 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 962 | 80.50 | wind | 9.0 | 10 | < th | dose dependent | rect. | 2 | 6 |