BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0715100 Os06g0715100|AK068956
(206 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35190.1 | chr2:14831087-14832979 FORWARD LENGTH=266 299 7e-82
AT3G17440.1 | chr3:5969909-5972290 REVERSE LENGTH=270 243 7e-65
AT1G48240.1 | chr1:17809223-17811656 REVERSE LENGTH=266 235 1e-62
>AT2G35190.1 | chr2:14831087-14832979 FORWARD LENGTH=266
Length = 265
Score = 299 bits (765), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/206 (72%), Positives = 176/206 (85%), Gaps = 6/206 (2%)
Query: 3 LESVNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKDFE 62
+ +V+ ELAEI+GQI DI RAL NGFQKL+KIKDANR+SRQLEELTDKMRDCK LIKDF+
Sbjct: 4 ISAVSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFD 63
Query: 63 RVVKDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQY----ASENKRVDLFDGPSVED 118
R +K + D T RML+DR+QSM+KELNSYVALKK+Y AS NKRVDLFDGP E
Sbjct: 64 REIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFDGPGEE- 122
Query: 119 GFGEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQ 178
EENVLLASNM+NQ+LMD+GN +MD+TDQAI R K+ VQETINVGT+T+AALK+QTEQ
Sbjct: 123 -HMEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDTSAALKAQTEQ 181
Query: 179 MSRIVNELDSIHFSIKKASQMVKEIG 204
MSR+VNELDSIHFS+KKAS++VKEIG
Sbjct: 182 MSRVVNELDSIHFSLKKASKLVKEIG 207
>AT3G17440.1 | chr3:5969909-5972290 REVERSE LENGTH=270
Length = 269
Score = 243 bits (619), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 126/204 (61%), Positives = 160/204 (78%), Gaps = 4/204 (1%)
Query: 5 SVNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKDFERV 64
++P+L +I G+I D RAL NGFQ+LDKIKD+ R+S+QLEELTDKMR+CKRL+K+F+R
Sbjct: 6 PMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRE 65
Query: 65 VKDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASE--NKRVDLFD-GPSVE-DGF 120
+KD PE + L+D KQSMIKELNSYVAL+K Y S NK+V+LFD G V +
Sbjct: 66 LKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSGEPT 125
Query: 121 GEENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMS 180
EENV +AS+M+NQ+L+D G + MDETDQAI RSKQ V++T+ VGT+TAA LK QT+QM
Sbjct: 126 AEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLKGQTDQMG 185
Query: 181 RIVNELDSIHFSIKKASQMVKEIG 204
R+VN LD+I FSIKKASQ+VKEIG
Sbjct: 186 RVVNHLDTIQFSIKKASQLVKEIG 209
>AT1G48240.1 | chr1:17809223-17811656 REVERSE LENGTH=266
Length = 265
Score = 235 bits (599), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/203 (59%), Positives = 158/203 (77%), Gaps = 4/203 (1%)
Query: 6 VNPELAEIDGQIGDILRALQNGFQKLDKIKDANRRSRQLEELTDKMRDCKRLIKDFERVV 65
++P L +I G+I D RAL NGFQ+LDKIKD++R+S+QLEEL +KMRDCKRL+K+F+R +
Sbjct: 7 MSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDREL 66
Query: 66 KDMAGSTDPETARMLHDRKQSMIKELNSYVALKKQYASE--NKRVDLFD-GPSVE-DGFG 121
KD P+ + L+D KQSMIKELNSYVAL+K Y + NK+V+LFD G V +
Sbjct: 67 KDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVSGEPTA 126
Query: 122 EENVLLASNMTNQQLMDQGNQLMDETDQAIARSKQTVQETINVGTETAAALKSQTEQMSR 181
EENV +AS M+NQ+L+D G + MDETDQAI RSKQ V +T+ VGT+TA+ LK QT+QM R
Sbjct: 127 EENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLKGQTDQMGR 186
Query: 182 IVNELDSIHFSIKKASQMVKEIG 204
+VN+LD+I FS+KKASQ+VKEIG
Sbjct: 187 VVNDLDTIQFSLKKASQLVKEIG 209
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.128 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,874,905
Number of extensions: 148816
Number of successful extensions: 656
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)